Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0558
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   0.93 
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    27   1.2  
SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||...    27   1.6  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.0  
SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.6  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   6.6  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    24   8.7  
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         24   8.7  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    24   8.7  

>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 140

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -2

Query: 405 LFYLHNIFLFANLGL---YYFFNYHKICIFLIFFVIIQISLILYVSVKFL 265
           L Y+    +FAN  +   YYF  +    +F+ FF+ + I L+ ++   +L
Sbjct: 33  LLYVFLFIIFANCVVDVKYYFEGFSHSLLFVYFFLTLIILLVSFMGFHYL 82


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = -2

Query: 399 YLHNIFLFANLGL-YYFFN--YHKICIFLIF-FVIIQISLILYVSVKFL*LSFIVNLS 238
           YL +  L  NLGL +YFF   +++   F +F F I+ +  +L VS++   L   + ++
Sbjct: 239 YLDSHDLTPNLGLWWYFFTEMFNEFRTFFLFVFAILPLMFVLPVSIRLYYLPLPITIA 296


>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 252

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 46  WYLPVRGHMPYQ*TVVLIL 102
           WYLP+  H+P+Q  + +IL
Sbjct: 94  WYLPLLNHIPHQFRIDIIL 112


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = -1

Query: 352 FQLSQNMYFLNFLRYHTNFINTLC*CEVFIVKFYS*FIKLNYSYTLLSLRKLAYWQY*SN 173
           F LSQ   F NFL   T    +L  C +    F   F+  ++S++ L      +  Y S+
Sbjct: 90  FPLSQKRPFPNFLHPFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149

Query: 172 KIIL 161
             IL
Sbjct: 150 FPIL 153


>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 14  LLLHGRNRQASGTCLCGVTCLTS 82
           ++LHG N QA+    CG+  +TS
Sbjct: 110 IVLHGINHQAAMLTACGLFMVTS 132


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -2

Query: 417 SFFILFYLHNIFLFANLGLYYFFNYHKICIFLIFFVIIQISLILY 283
           +F+ +  L + F    +G++ F  YH   ++ I FV+I + L +Y
Sbjct: 388 TFYNISLLTSDFWSLVIGIHVF-GYHVYWLYPIAFVLIILGLFVY 431


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -2

Query: 411 FILFYLHNIFLFANLGLYYFFNYHKICIFLIFFVIIQISLI 289
           F +F + +I L++ +  YY   Y+ ICI +I  V I  SLI
Sbjct: 334 FYIFQVFSIILWS-MDSYY---YYAICILIISVVSILGSLI 370


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 414 FFILFYLHNIFLFANLGLY 358
           FF LF+L N  LF  + LY
Sbjct: 77  FFFLFWLLNFILFFRIHLY 95


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 399 YLHNIFLFANLGLYYFFNYHKICIFL 322
           Y H  +L  +L  Y+++     CIFL
Sbjct: 71  YFHRFYLRFSLKNYHYYEVAATCIFL 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,458,143
Number of Sequences: 5004
Number of extensions: 26352
Number of successful extensions: 82
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)