Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0558
         (430 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1324 - 25825153-25825197,25825705-25825785,25825907-258259...    30   0.69 
02_05_0942 + 32970537-32970581,32971059-32971113,32971300-329714...    30   0.91 
06_03_0895 - 25739515-25740498                                         28   2.8  
07_03_0836 - 21856808-21858451,21858600-21859487,21860019-21860048     27   6.4  
05_05_0344 + 24237250-24237687                                         27   6.4  
06_01_0067 + 561910-561987,562698-562759,564293-564338,564701-56...    27   8.5  

>07_03_1324 -
           25825153-25825197,25825705-25825785,25825907-25825967,
           25826005-25826060,25826171-25826239,25826366-25826473,
           25826555-25826635,25826795-25826951,25827060-25827177,
           25827285-25827339,25827779-25827814
          Length = 288

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 12/25 (48%), Positives = 20/25 (80%)
 Frame = +3

Query: 81  VDRSLDTIRKRFQRFLEQYLGIVEN 155
           VD +++TIRKRF+ F+E  L ++E+
Sbjct: 152 VDDNIETIRKRFKVFVESSLPVIEH 176


>02_05_0942 +
           32970537-32970581,32971059-32971113,32971300-32971417,
           32971567-32971615,32971637-32971723,32971890-32971970,
           32972074-32972181,32972432-32972503,32973218-32973250
          Length = 215

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +3

Query: 81  VDRSLDTIRKRFQRFLEQYLGIVE 152
           VD +++TIRKRF+ F+E  L ++E
Sbjct: 148 VDDNIETIRKRFKVFVESSLPVIE 171


>06_03_0895 - 25739515-25740498
          Length = 327

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 1  RHERITASRQK*AG*WYLPVRGHM 72
          RH R+  +R+   G W LPV GH+
Sbjct: 27 RHRRLAGARRPPPGPWALPVIGHL 50


>07_03_0836 - 21856808-21858451,21858600-21859487,21860019-21860048
          Length = 853

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = -2

Query: 423 LTSFFILFYLHNIFLFANLGLYYFFNYHKICIFLIFFVIIQISLILYVSVKFL*LSFI 250
           +TS F+LFYL    ++   G++Y        +  +  VI    +I  V +K+  L+ +
Sbjct: 623 VTSVFLLFYLLFPVIWIFRGIFYIQKPFPTYVLYLVIVIFMSEMIGMVEIKWAGLTLL 680


>05_05_0344 + 24237250-24237687
          Length = 145

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 24  TAEIGRLVVPACAGSHALPVDR---SLDTIRKRFQRFLEQYLGIVENCSRIIL 173
           TA+I  LVV   AG+H+L  D    +L  +R   QR +    G   +CS + L
Sbjct: 15  TADITHLVVSTNAGAHSLGTDEWLAALLGLRATVQRTILYMHGCSASCSALRL 67


>06_01_0067 +
           561910-561987,562698-562759,564293-564338,564701-564758,
           564892-565009,565130-565286,565611-565718,565884-565955,
           566058-566174,566309-566404
          Length = 303

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 84  DRSLDTIRKRFQRFLEQYLGIVE 152
           D ++DTIR+RF  F +Q L +++
Sbjct: 177 DDNIDTIRRRFDVFQQQTLPVIQ 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,361,170
Number of Sequences: 37544
Number of extensions: 136431
Number of successful extensions: 292
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)