Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0558
         (430 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)                   30   0.71 
SB_28037| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_3500| Best HMM Match : MRG (HMM E-Value=1.5)                        27   6.6  
SB_20299| Best HMM Match : JmjC (HMM E-Value=4.1)                      27   8.7  
SB_18509| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
          Length = 761

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 12/56 (21%), Positives = 28/56 (50%)
 Frame = -2

Query: 414 FFILFYLHNIFLFANLGLYYFFNYHKICIFLIFFVIIQISLILYVSVKFL*LSFIV 247
           F  + +   +F+F     +  F ++   +F++F   + +  + +VSV F+   F+V
Sbjct: 694 FLFVVFAFVVFIFIFFFAFVIFVFNAFFVFVVFAFFVFLVFVFFVSVVFVFFVFVV 749


>SB_28037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 458

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 109 RGSKDF*NNIWELSKTVVELSYCFSIASMQASLGLATYNCN 231
           R S +   ++W L   ++E    +SI S   +  + T  CN
Sbjct: 379 RNSTELSKHVWTLKDNMIEYFISWSILSSHPAYNITTKRCN 419


>SB_3500| Best HMM Match : MRG (HMM E-Value=1.5)
          Length = 277

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = -1

Query: 229 YSYTLLSLRKLAYWQY*SNKIILLQFSTIPKYCSKNLWNLFL-IVSRLRSTGKACDPAQA 53
           +  T+ +LRK   ++  +++  LL+ ++ P Y S  ++N  L  V +++ T     PA  
Sbjct: 133 FGKTMENLRKRVDFRLVTDEKKLLKLTSKPSYVSSKIFNKDLGAVRKIKETLTLNRPAYV 192

Query: 52  GTTSLPISAV 23
           G   L +S V
Sbjct: 193 GMCILDLSKV 202


>SB_20299| Best HMM Match : JmjC (HMM E-Value=4.1)
          Length = 347

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 109 RGSKDF*NNIWELSKTVVELSYCFSIASMQASLGLATYNCN 231
           R S +   ++W L  +++E    + I S Q++    T  CN
Sbjct: 291 RNSTELSKHVWTLKDSMIEYFVSWRILSSQSAYNSTTKRCN 331


>SB_18509| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -2

Query: 408 ILFYLHNIFLFANLGLYYFFNYHKICIFLIFFVIIQISLILYVSVKFL*LSFIVNLSNLI 229
           ILF  H +++     LY+   Y  +     FF  I ++LI Y++     + ++V + N  
Sbjct: 164 ILFASHTVYILITPALYFIVGYKALA---KFFTDIGVTLI-YLNSALNPIIYLVRMRNST 219

Query: 228 TVIR 217
            ++R
Sbjct: 220 WILR 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,215,766
Number of Sequences: 59808
Number of extensions: 176537
Number of successful extensions: 400
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)