Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0558
         (430 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    24   2.6  
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    22   8.0  
AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    22   8.0  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    22   8.0  

>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
            channel alpha1 subunit protein.
          Length = 1893

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -2

Query: 375  ANLGLYYFFNYHKICIFLIFFVIIQI 298
            +N+   YF +++ +C FLI  + + +
Sbjct: 1398 SNIAFPYFISFYVLCSFLIINLFVAV 1423


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 363 LYYFFNYHKICIFLIFFVIIQISL 292
           LYYFFN    C+ +    ++  +L
Sbjct: 215 LYYFFNLIVPCVLIASMALLGFTL 238


>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 363 LYYFFNYHKICIFLIFFVIIQISL 292
           LYYFFN    C+ +    ++  +L
Sbjct: 247 LYYFFNLIVPCVLIASMALLGFTL 270


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +3

Query: 93  LDTIRKRFQRFLEQYLGIVENC 158
           ++ I+   + +LE +L + +NC
Sbjct: 418 IEAIKAAIKAYLEAFLSVFQNC 439


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 358,172
Number of Sequences: 2352
Number of extensions: 6278
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 35292513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)