Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0558
         (430 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical ...    28   2.5  
AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    28   3.3  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    28   3.3  
Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AF016675-4|AAB66137.1|  356|Caenorhabditis elegans Hypothetical ...    27   7.5  
Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical pr...    26   10.0 
U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis...    26   10.0 

>AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical
           protein F52G3.4 protein.
          Length = 1009

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -2

Query: 357 YFFNYHKICIFLIFFVIIQISLILYVSVKFL 265
           +FF+YH  CI LIF +   I  IL  SV FL
Sbjct: 2   FFFSYHFFCI-LIFHI---IKFILITSVSFL 28


>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 11  ALLLHGRNRQASGTCLCG 64
           A L+ GRN+++ GTC CG
Sbjct: 66  ASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 11  ALLLHGRNRQASGTCLCG 64
           A L+ GRN+++ GTC CG
Sbjct: 66  ASLIFGRNKRSGGTCGCG 83


>Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical
           protein T19B10.5 protein.
          Length = 705

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -2

Query: 423 LTSFFILFYL--HNIFLFANLGLYYFF 349
           ++S F+L +L   N  LF N+ LYYFF
Sbjct: 31  ISSLFVLPFLISRNALLFFNVFLYYFF 57


>AF016675-4|AAB66137.1|  356|Caenorhabditis elegans Hypothetical
           protein T27B7.5 protein.
          Length = 356

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 384 FLFANLGLYYFFNYHKICIFLI 319
           F++  LGL+YFF Y  +  FLI
Sbjct: 17  FVYQCLGLFYFFLYPPVLHFLI 38


>Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical
           protein K05D4.3 protein.
          Length = 321

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -2

Query: 408 ILFYLHNIFLFANLGLYYFFNYHKICIFLIFFVIIQISLILYV 280
           ++F+L  +  F    ++Y F+Y  + +FL+   +  I LIL +
Sbjct: 166 VIFFLMCLRDFEAAKVFYMFSYISMHLFLLISALTYILLILNI 208


>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
           transmembrane conductanceregulator homolog protein 1
           protein.
          Length = 1247

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 381 LFANLGLYYFFNYHKICIFLIFFVIIQISLILYVSVKFL*LSF 253
           +F N  +Y F+      IF  F++++ I   ++ ++ F  LSF
Sbjct: 673 VFENRSVYPFYFRSGSFIFTAFYIVLLICRFVFQALAFFWLSF 715


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,946,628
Number of Sequences: 27780
Number of extensions: 145498
Number of successful extensions: 443
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)