Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0558
(430 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 1.9
AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly pro... 23 1.9
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 3.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 3.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 3.3
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 21 4.4
AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 21 4.4
DQ000307-1|AAY21180.1| 423|Apis mellifera major royal jelly pro... 21 5.8
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.6 bits (46), Expect = 1.9
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -2
Query: 363 LYYFFNYHKICIFLIFFVIIQISL 292
LYYFFN C+ + ++ +L
Sbjct: 232 LYYFFNLIVPCVLIASMAVLGFTL 255
>AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly
protein 8 protein.
Length = 416
Score = 22.6 bits (46), Expect = 1.9
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = -1
Query: 346 LSQNMYFLNFLRYHTNFINT 287
L+QN+Y+ ++ N++NT
Sbjct: 259 LTQNLYYSALSSHNLNYVNT 278
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 3.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -2
Query: 363 LYYFFNYHKICIFLIFFVIIQISL 292
LYYFFN C+ + ++ +L
Sbjct: 195 LYYFFNLIVPCVLISSMALLGFTL 218
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 3.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -2
Query: 363 LYYFFNYHKICIFLIFFVIIQISL 292
LYYFFN C+ + ++ +L
Sbjct: 195 LYYFFNLIVPCVLISSMALLGFTL 218
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 3.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -2
Query: 363 LYYFFNYHKICIFLIFFVIIQISL 292
LYYFFN C+ + ++ +L
Sbjct: 195 LYYFFNLIVPCVLISSMALLGFTL 218
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 3.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -2
Query: 363 LYYFFNYHKICIFLIFFVIIQISL 292
LYYFFN C+ + ++ +L
Sbjct: 195 LYYFFNLIVPCVLISSMALLGFTL 218
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 3.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -2
Query: 363 LYYFFNYHKICIFLIFFVIIQISL 292
LYYFFN C+ + ++ +L
Sbjct: 195 LYYFFNLIVPCVLISSMALLGFTL 218
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 3.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -2
Query: 363 LYYFFNYHKICIFLIFFVIIQISL 292
LYYFFN C+ + ++ +L
Sbjct: 195 LYYFFNLIVPCVLISSMALLGFTL 218
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 3.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -2
Query: 363 LYYFFNYHKICIFLIFFVIIQISL 292
LYYFFN C+ + ++ +L
Sbjct: 263 LYYFFNLIVPCVLISSMALLGFTL 286
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 3.3
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -2
Query: 363 LYYFFNYHKICIFLIFFVIIQISL 292
LYYFFN C+ + ++ +L
Sbjct: 263 LYYFFNLIVPCVLISSMALLGFTL 286
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 21.4 bits (43), Expect = 4.4
Identities = 8/29 (27%), Positives = 20/29 (68%), Gaps = 6/29 (20%)
Frame = -2
Query: 342 HKICIF---LIFFV---IIQISLILYVSV 274
H++C+F ++F V ++ + +++Y+SV
Sbjct: 175 HRLCVFVAGVVFIVSGLLMLVGMVMYISV 203
>AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139
protein.
Length = 232
Score = 21.4 bits (43), Expect = 4.4
Identities = 6/18 (33%), Positives = 14/18 (77%)
Frame = -2
Query: 327 FLIFFVIIQISLILYVSV 274
FL+F +++QI++ +Y +
Sbjct: 87 FLLFILLVQIAVAVYAFI 104
>DQ000307-1|AAY21180.1| 423|Apis mellifera major royal jelly
protein 9 protein.
Length = 423
Score = 21.0 bits (42), Expect = 5.8
Identities = 6/19 (31%), Positives = 13/19 (68%)
Frame = -1
Query: 343 SQNMYFLNFLRYHTNFINT 287
+QN+Y+ ++ N++NT
Sbjct: 259 TQNLYYSAMSSHNLNYVNT 277
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,997
Number of Sequences: 438
Number of extensions: 1960
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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