Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0558
         (430 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recogniti...    36   0.015
At5g26667.2 68418.m03158 uridylate kinase / uridine monophosphat...    27   4.1  
At5g26667.1 68418.m03157 uridylate kinase / uridine monophosphat...    27   4.1  
At3g15530.2 68416.m01969 expressed protein                             27   5.4  
At3g15530.1 68416.m01968 expressed protein                             27   5.4  
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea...    26   9.4  
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea...    26   9.4  

>At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recognition
           Nexus) repeat-containing protein
           /phosphatidylinositol-4-phosphate 5-kinase-related low
           similarity to phosphatidylinositol-4-phosphate 5-kinase
           AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
           Pfam profile PF02493: MORN repeat
          Length = 484

 Score = 35.5 bits (78), Expect = 0.015
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = -2

Query: 423 LTSFFILFYLHNIFLFANLGLYYFFNYHKICIFL-IFFVIIQISLILYVSVKF 268
           L +  I F+L  + L A   LY FF    + IFL + FVII +S IL +S++F
Sbjct: 116 LRARLICFHLRFLLLLAVPPLYIFFLVINLRIFLRLVFVIIALSFILSISLRF 168


>At5g26667.2 68418.m03158 uridylate kinase / uridine monophosphate
           kinase / UMP kinase (PYR6) identical to uridylate kinase
           /  UMP/CMP kinase SP:O04905 from [Arabidopsis thaliana]
          Length = 202

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 84  DRSLDTIRKRFQRFLEQYLGIV 149
           D +++TIRKRF+ FLE  L ++
Sbjct: 143 DDNIETIRKRFKVFLESSLPVI 164


>At5g26667.1 68418.m03157 uridylate kinase / uridine monophosphate
           kinase / UMP kinase (PYR6) identical to uridylate kinase
           /  UMP/CMP kinase SP:O04905 from [Arabidopsis thaliana]
          Length = 208

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 84  DRSLDTIRKRFQRFLEQYLGIV 149
           D +++TIRKRF+ FLE  L ++
Sbjct: 143 DDNIETIRKRFKVFLESSLPVI 164


>At3g15530.2 68416.m01969 expressed protein
          Length = 288

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 408 ILFYLHNIFLFANLGLYYFFNYHKICIFLIFFVI 307
           ++F L + F F+ L L +   + +IC FL  F +
Sbjct: 25  LVFLLFHAFFFSLLSLLFLIYFDQICFFLDSFFL 58


>At3g15530.1 68416.m01968 expressed protein
          Length = 288

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 408 ILFYLHNIFLFANLGLYYFFNYHKICIFLIFFVI 307
           ++F L + F F+ L L +   + +IC FL  F +
Sbjct: 25  LVFLLFHAFFFSLLSLLFLIYFDQICFFLDSFFL 58


>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
           family protein Strong similarity to gb X95263 Periodic
           tryptophan protein 2 gene (PWP2) from Homo sapiens and
           contains 6 WD40, G-beta repeat domains
          Length = 860

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 105 RKRFQRFLEQYLGIVENCSRIILLL*YCQ 191
           +K  +R +E  + ++ENC  +  +L +CQ
Sbjct: 776 QKYLERLMEALVDLLENCPHLEFILHWCQ 804


>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
           family protein Strong similarity to gb X95263 Periodic
           tryptophan protein 2 gene (PWP2) from Homo sapiens and
           contains 6 WD40, G-beta repeat domains
          Length = 900

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 105 RKRFQRFLEQYLGIVENCSRIILLL*YCQ 191
           +K  +R +E  + ++ENC  +  +L +CQ
Sbjct: 816 QKYLERLMEALVDLLENCPHLEFILHWCQ 844


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,177,964
Number of Sequences: 28952
Number of extensions: 123067
Number of successful extensions: 291
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)