Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0557
         (635 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    27   0.13 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       26   0.23 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.8  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    21   8.6  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   8.6  

>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 27.1 bits (57), Expect = 0.13
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 349 FYDHSPFNLTYVKKGKRSRNTTVALKEARA*RAKFKLH 462
           +Y H P   TY   GK  + T   L + R  R   + H
Sbjct: 226 WYQHQPLLFTYTDDGKNQQRTGTELTKMRPKRQSSRRH 263


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 138 HTAHLMVSGYHRPWTSTMPGAEPSGTI 58
           +T H+   G+H P+T  M G E S  +
Sbjct: 486 YTIHMGYHGFHNPFTCNMCGVECSDKV 512


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 102 GDGNHSPSSGPCARTSA 152
           G GN+ P  GP +  SA
Sbjct: 530 GSGNNQPPGGPSSHVSA 546


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 313 LVSQLNSAGFNSFYDH 360
           L+ Q+    F+SF+DH
Sbjct: 45  LIKQIGVKEFDSFHDH 60


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 130 PLDGEWLPSPMDFNNA 83
           PLDGEW    ++ N++
Sbjct: 221 PLDGEWQRDNLNANSS 236


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,159
Number of Sequences: 336
Number of extensions: 2963
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)