Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0557
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    26   4.0  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    25   6.9  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.1  

>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 516 LGTITVHGYKSTENELKVLEIRL**HTYMLVVGPL 620
           +GT+ VH Y    N+L+ + +      YML VG L
Sbjct: 281 IGTLGVHRYLHVLNQLRKMILNAGKKPYMLAVGKL 315


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 497 MLFACTSEIKRKCNLNLARYARASFKATVVFRERFPFLTYVRLNG 363
           M F+CT +     N N+ +YA +SF   +  +     L +   NG
Sbjct: 41  MAFSCTQKPSVSENENVGKYASSSFAERIFCKNCGTTLYFAYTNG 85


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 26  PPGTSSLWYQKIVPLGS 76
           PPGT+++ YQK VP  S
Sbjct: 51  PPGTTTVVYQKDVPRSS 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,076
Number of Sequences: 5004
Number of extensions: 47179
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)