Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0557
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0188 - 23433753-23436572                                         29   4.1  
05_07_0327 - 29275916-29276017,29276101-29276283,29276392-292764...    28   7.1  
05_05_0103 - 22408832-22410041,22410500-22410628,22411600-224117...    28   7.1  
08_02_0925 - 22668875-22668889,22668942-22669018,22669383-226695...    27   9.4  
07_03_0877 - 22240266-22241109,22241238-22241367,22241483-22241615     27   9.4  
07_01_0996 - 8390744-8391361                                           27   9.4  

>04_04_0188 - 23433753-23436572
          Length = 939

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -1

Query: 515 GLNKHGMLFACTSEIKRKCNLNLARYARASF--KATVVFRE 399
           G   H  L  C +E   +CN  L  YAR  +   A  VFRE
Sbjct: 284 GRELHAALLKCGTEFNIQCNALLVMYARCGWVDSALRVFRE 324


>05_07_0327 -
           29275916-29276017,29276101-29276283,29276392-29276453,
           29276590-29276671,29276922-29276987,29277297-29277359,
           29277466-29277570,29277678-29277887,29277988-29278103,
           29278875-29279082
          Length = 398

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -2

Query: 187 YER*LKSFFFALADVRAHGPLDGEWLPSPMDFNNARCRAKWHNLLIPEAGGSRWS 23
           Y R  ++  + LAD   H  LDG + P  +    A+ +    +   P AG  RWS
Sbjct: 339 YFRAQEAIDYGLADTILHS-LDGSFKPKDLTAQLAKAQEMRQSGKRPAAGAGRWS 392


>05_05_0103 -
           22408832-22410041,22410500-22410628,22411600-22411703,
           22411780-22411874,22412483-22412540,22412741-22412792,
           22415399-22415532
          Length = 593

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 145 VRAHGPLDGEWLPSPMDFN-NARCRAKWHNLLIPEAGGSRWS 23
           V+ HGP     +   ++     +CR +WHN L P+     W+
Sbjct: 122 VKKHGPKKWSVIARSLNGRIGKQCRERWHNHLDPQIRKEAWT 163


>08_02_0925 -
           22668875-22668889,22668942-22669018,22669383-22669500,
           22669662-22669685,22670067-22670360,22670456-22670563,
           22671098-22671946
          Length = 494

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 479 SEIKRKCNLNLARYARASFKATVVFRERFPFL 384
           S+ + +  + LA+Y RAS KA V FR+   FL
Sbjct: 389 SKPREEAIIELAKYKRASPKAKVFFRDMESFL 420


>07_03_0877 - 22240266-22241109,22241238-22241367,22241483-22241615
          Length = 368

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -2

Query: 154 LADVRAHGPLDGEWLPSPMDFNNARC----RAKWHNLLIPEAGGSRWSY 20
           +A ++ HG   G W   P +   +RC    R +W N L P+    R+S+
Sbjct: 26  IAYIKEHG--QGNWRTLPKNAGLSRCGKSCRLRWTNYLRPDIKRGRFSF 72


>07_01_0996 - 8390744-8391361
          Length = 205

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = +2

Query: 14  LQVAPPGTSSLWYQKI 61
           LQ+APPGT+S+ +QK+
Sbjct: 179 LQLAPPGTTSVAFQKV 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,285,937
Number of Sequences: 37544
Number of extensions: 303643
Number of successful extensions: 722
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)