Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0557
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_43110| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_12467| Best HMM Match : Ank (HMM E-Value=3.2e-10)                   27   9.7  

>SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 343 NSFYDHSPFNLTYVKKGKRSRNTTVALKE 429
           +SF  H P+N   V KGKRSR  T+   E
Sbjct: 786 HSFPFHQPYNTERVVKGKRSRPLTMITSE 814


>SB_43110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -1

Query: 467 RKCNLNLARYARASFK---ATVVFRERFPFLTYVRLNGLWS*NELKPALFNC 321
           + CNLN  RY   SF+   AT   ++  P  T +RL G W  +  K ++  C
Sbjct: 273 KACNLNPGRYKGHSFRIGGATCAAQQGLP-NTQIRLLGRWKSDAFKKSIRLC 323


>SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 82  RCRAKWHNLLIPEAGGSRWS 23
           +CR +WHN L P    S W+
Sbjct: 127 QCRERWHNHLNPHISKSSWT 146


>SB_12467| Best HMM Match : Ank (HMM E-Value=3.2e-10)
          Length = 444

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +2

Query: 146 VCKGK-KKTFESSLIISKYW 202
           VCKG  +KTF+  ++ISK W
Sbjct: 99  VCKGDIEKTFQQDIVISKEW 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,993,637
Number of Sequences: 59808
Number of extensions: 356529
Number of successful extensions: 933
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)