Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0557
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024761-2|AAF59463.1|  174|Caenorhabditis elegans Hypothetical ...    30   1.6  
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas...    27   8.5  
AL132876-20|CAD92404.1| 1127|Caenorhabditis elegans Hypothetical...    27   8.5  
AL132876-19|CAD21673.1| 1161|Caenorhabditis elegans Hypothetical...    27   8.5  

>AC024761-2|AAF59463.1|  174|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.9 protein.
          Length = 174

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 530 CDRAQGLNKHGMLFACTSEIKRKCNL 453
           CD A+  N HG+ F  T+++   CNL
Sbjct: 138 CDSARDCNGHGLCFGTTNQLTCLCNL 163


>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
            ccr4/not complexcomponent) protein 1 protein.
          Length = 2500

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 231  KELNKELNNLQYLEIMRDDSKVFFLPLQ 148
            KELN +LN LQ   I++D  K+  +P Q
Sbjct: 1333 KELNVDLNQLQMDGILKDTEKLVRVPQQ 1360


>AL132876-20|CAD92404.1| 1127|Caenorhabditis elegans Hypothetical
           protein Y105E8A.24b protein.
          Length = 1127

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = +2

Query: 245 HLSEPSIENATI-ILFNLDSINN 310
           ++S+PS+ NATI   F+LDS+N+
Sbjct: 581 YVSDPSVANATIRYTFDLDSLNS 603


>AL132876-19|CAD21673.1| 1161|Caenorhabditis elegans Hypothetical
           protein Y105E8A.24a protein.
          Length = 1161

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = +2

Query: 245 HLSEPSIENATI-ILFNLDSINN 310
           ++S+PS+ NATI   F+LDS+N+
Sbjct: 581 YVSDPSVANATIRYTFDLDSLNS 603


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,990,198
Number of Sequences: 27780
Number of extensions: 270030
Number of successful extensions: 550
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)