Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0557
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28110.1 68417.m04032 myb family transcription factor (MYB41)...    29   3.4  
At5g58850.1 68418.m07374 myb family transcription factor (MYB119...    28   6.0  
At2g38680.1 68415.m04750 pyrimidine 5'-nucleotidase family prote...    27   7.9  

>At4g28110.1 68417.m04032 myb family transcription factor (MYB41)
           contains PFAM profile: myb DNA binding protein PF00249
          Length = 282

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -2

Query: 145 VRAHGPLDGEWLPSPMDFNNA--RCRAKWHNLLIPEAGGSRWSY 20
           +R HGP +   LP     +     CR +W N L P+    R+S+
Sbjct: 29  IRFHGPGNWRTLPKNAGLHRCGKSCRLRWTNYLRPDIKRGRFSF 72


>At5g58850.1 68418.m07374 myb family transcription factor (MYB119)
           contains Pfam profile: PF00249 myb-like DNA binding
           domain
          Length = 430

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -2

Query: 145 VRAHGPLDGEWLPSPMDFNNAR-CRAKWHNLLIPEAGGSRWS 23
           VR HG      +   ++    + CR +WHN L P+     WS
Sbjct: 120 VRQHGERKWAMISEKLEGRAGKQCRERWHNHLRPDIKKDGWS 161


>At2g38680.1 68415.m04750 pyrimidine 5'-nucleotidase family protein
           / uridine monophosphate hydrolase-1 (UMPH-1) family
           protein similar to pyrimidine 5'-nucleotidase [Homo
           sapiens] GI:11245474; contains Pfam profile PF05822:
           Pyrimidine 5'-nucleotidase (UMPH-1)
          Length = 275

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 322 VTLKVIYTVEIK*YYCCIFN 263
           VTLK I  +E+  Y+CC++N
Sbjct: 141 VTLKSISLLELLSYFCCLYN 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,063,842
Number of Sequences: 28952
Number of extensions: 246023
Number of successful extensions: 612
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)