Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0556
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    27   3.0  
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha...    25   7.0  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    25   9.3  

>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 531 CTVKILQPLINISVGRLDFKLLTKRHVFDKQVNINIC 421
           C+V I     N+S G L ++LL +    D ++ +  C
Sbjct: 212 CSVMIYPGAFNLSTGPLHWELLARARAVDNEMFVACC 248


>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
           Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 75

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 443 LSKTCLFVNNLKSNLPTDIFIKGCSILTV 529
           L +T  +VN  K+N+  D FI+G ++L V
Sbjct: 42  LERTEEYVNGKKTNVYGDAFIRGNNVLYV 70


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 584 HPNLSYSHQLKTNDYATFVQSKYCS 510
           HP +S +  L TN+ AT V + Y S
Sbjct: 299 HPQVSMTPSLSTNNTATSVPAPYSS 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,099,920
Number of Sequences: 5004
Number of extensions: 13436
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)