Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0555
         (620 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q57V42 Cluster: Putative uncharacterized protein; n=1; ...    38   0.19 
UniRef50_UPI00015B550F Cluster: PREDICTED: similar to blooms syn...    37   0.45 
UniRef50_A0D532 Cluster: Chromosome undetermined scaffold_38, wh...    33   4.2  

>UniRef50_Q57V42 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 321

 Score = 37.9 bits (84), Expect = 0.19
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = +2

Query: 44  LFIENCNVIFISVLGYKEIIVIMTLRREVDLYWDAFQQTQALAPLCNSKFLQHFDCGVRH 223
           +F    NVIF  V  Y  + V++ L R V   W   +Q   L+P+  S+F++H++ G   
Sbjct: 177 MFFVGGNVIFYYVFVYLVVAVLVLLPRFVSS-WFIRRQAPTLSPVLVSQFIEHYNTGALR 235

Query: 224 RC 229
            C
Sbjct: 236 NC 237


>UniRef50_UPI00015B550F Cluster: PREDICTED: similar to blooms syndrome
            DNA helicase; n=1; Nasonia vitripennis|Rep: PREDICTED:
            similar to blooms syndrome DNA helicase - Nasonia
            vitripennis
          Length = 1164

 Score = 36.7 bits (81), Expect = 0.45
 Identities = 22/62 (35%), Positives = 32/62 (51%)
 Frame = -1

Query: 548  TCLNCVITKMNYFINLCIKK*FKSLTRSILYT*RVIRGRKTCYTVISISRGTNIPRYRGG 369
            TC NC+I   + F NL + K  K+L R I    RV +   T   V+ I +G+N+   R  
Sbjct: 868  TCDNCLI--YDQFFNLDVTKDAKALVRLIQELHRVKQNNVTALQVVDIYKGSNVSDIRNT 925

Query: 368  YY 363
            Y+
Sbjct: 926  YH 927


>UniRef50_A0D532 Cluster: Chromosome undetermined scaffold_38, whole
            genome shotgun sequence; n=3; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_38, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 2039

 Score = 33.5 bits (73), Expect = 4.2
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +2

Query: 62   NVIFISVLGYKEIIVIMTLRREVDLYWDAFQQTQALAPLCNSKFLQHF-DCG 214
            N + ++++    + + + L  E+ L+ +AF+Q + L   CN+ + QH  DCG
Sbjct: 1367 NKLKLNIIKLLALFMTLILALELHLWENAFEQLRKLETFCNTVYKQHVQDCG 1418


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 553,241,852
Number of Sequences: 1657284
Number of extensions: 10291037
Number of successful extensions: 19161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19159
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)