Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0555
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   6.7  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.8  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    25   8.8  

>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -1

Query: 230 DTGDVHRSQSVEETYYYIKAQVPVSAGKRPNTNRP 126
           D G  H S    +T   I+  VPVSA      N P
Sbjct: 650 DVGKEHMSMIPNQTAPMIQPNVPVSANSPAQANTP 684


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 156 RHRHLRLYVIVSFFNTLTAVYVTGVLRG 239
           R  +  +YV++S  +TL  VYVT  L G
Sbjct: 619 RKSNRAVYVLISSNSTLLTVYVTLTLEG 646


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 176 LCNSKFLQHFDCGVRHR 226
           LCN++ L H DC   +R
Sbjct: 3   LCNNQLLDHLDCNAVYR 19


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,994
Number of Sequences: 5004
Number of extensions: 46185
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)