Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0555
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0162 + 6053144-6053365,6053474-6053548,6054477-6054623,605...    28   6.9  
01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723...    27   9.1  

>03_02_0162 +
           6053144-6053365,6053474-6053548,6054477-6054623,
           6054749-6055300,6055387-6055622,6055914-6056130
          Length = 482

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -1

Query: 485 FKSLTRSILYT*RVIRGRKTCYTVISISRGTNIPRYRGGYYISLSDGIYECLD 327
           F  +TR ++YT     G++      +I+ G  I R    + ++  DG Y   D
Sbjct: 351 FNKVTRGVMYTKEEAEGKRLKNPFDTITEGIGINRVTKNFMMAELDGAYRGTD 403


>01_05_0660 - 24071523-24071780,24071873-24072127,24072209-24072380,
            24072458-24072685,24072785-24072918,24073005-24073088,
            24073231-24073521,24073599-24073931,24074016-24074266,
            24074354-24074620,24074707-24074867,24074978-24075294,
            24075386-24075667,24075753-24076054,24076147-24076237,
            24076326-24076379,24076497-24076573,24076700-24076859,
            24077129-24077213,24077421-24077630,24077736-24078097
          Length = 1457

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +2

Query: 350  HLEIYSNPPYNAV-YWFRVKWILPYNT-FYDLV*RVT 454
            +L  + NPPYNAV ++F     L + T F+DL  +VT
Sbjct: 1195 NLSYWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVT 1231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,045,033
Number of Sequences: 37544
Number of extensions: 256531
Number of successful extensions: 431
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)