Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0555
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   5.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.7  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 306 TDDRYNSKPRCLSNRNR 256
           T  RY+ + RC  +RNR
Sbjct: 227 TSSRYSRERRCSRDRNR 243


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 211 AVKVLKKLTIT*RRKCLCLLESVPIQ 134
           A+ V + L +  R++C  +LES+ I+
Sbjct: 455 AIPVRETLILPPRKRCKMILESMEIE 480


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 443 IRGRKTCYTVISISRGTNIP 384
           +RG K+C+T +  + G  IP
Sbjct: 141 LRGLKSCHTGVGRNVGYKIP 160


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 443 IRGRKTCYTVISISRGTNIP 384
           +RG K+C+T +  + G  IP
Sbjct: 141 LRGLKSCHTGVGRNVGYKIP 160


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 443 IRGRKTCYTVISISRGTNIP 384
           +RG K+C+T +  + G  IP
Sbjct: 141 LRGLKSCHTGVGRNVGYKIP 160


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 564 VIMNCTNLIXFTVQKY 611
           V M    LI FTV KY
Sbjct: 144 VFMGIVELIMFTVNKY 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,751
Number of Sequences: 438
Number of extensions: 3454
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)