Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0553
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   114   8e-27
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   6.1  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   8.0  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  114 bits (275), Expect = 8e-27
 Identities = 54/86 (62%), Positives = 71/86 (82%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   RAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNP-NIL*RLGFVFLFTVGGLTGVILAN 177
           RAYF++AT++IA+PTGIKIF  LAT+ G  I ++   +L  +GF+ LFT+GGLTGVIL+N
Sbjct: 308 RAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGLTGVILSN 367

Query: 178 SSIDITLHDTYYVVAHFHYVLSIGAV 255
           S +DI  HDTY+VVAHFHYVLS+GA+
Sbjct: 368 SVLDIAFHDTYFVVAHFHYVLSMGAL 393



 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 28/48 (58%), Positives = 33/48 (68%)
 Frame = +3

Query: 288 PLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 431
           P   GL  N  +  IQF+ +FIGVNI F PQHFLGL G+PRR  DYP+
Sbjct: 404 PKMFGLMYNETLASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDYPE 451


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 296 YRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRL 424
           +RPF KFL  K  IF + YW +  +  T +      T  I+ L
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGLLNGTGWIYSL 242


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +1

Query: 154 LTGVILANSSIDITLHDTYYVV 219
           L  ++LAN+++D T+H  Y+++
Sbjct: 657 LDHILLANATLDKTVHSAYWLM 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,774,368
Number of Sequences: 5004
Number of extensions: 29810
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)