Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0553
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                  132   2e-31
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   7e-14
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.018
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.018
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.018
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.018
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.018
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.018
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score =  132 bits (319), Expect = 2e-31
 Identities = 61/85 (71%), Positives = 74/85 (87%)
 Frame = +1

Query: 1   RAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGVILANS 180
           RAYFT+AT+IIAVPTGIK+F  LAT++G  I  +  +L  +GFVFLFT+GGLTGVILANS
Sbjct: 6   RAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGVILANS 65

Query: 181 SIDITLHDTYYVVAHFHYVLSIGAV 255
           S+D+ +HDTYYVVAHFHYVLS+GAV
Sbjct: 66  SLDVVMHDTYYVVAHFHYVLSMGAV 90



 Score = 74.1 bits (174), Expect = 7e-14
 Identities = 35/58 (60%), Positives = 39/58 (67%)
 Frame = +3

Query: 258 AIIGGFIN*YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 431
           AI  GF   +   TG   N    KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D
Sbjct: 92  AIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFAD 149


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 74.1 bits (174), Expect = 7e-14
 Identities = 35/58 (60%), Positives = 39/58 (67%)
 Frame = +3

Query: 258 AIIGGFIN*YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 431
           AI  GF   +   TG   N    KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D
Sbjct: 6   AIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFAD 63


>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 381 HFLGLAGIPRRYSDYPD 431
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17


>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 381 HFLGLAGIPRRYSDYPD 431
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17


>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 381 HFLGLAGIPRRYSDYPD 431
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17


>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 381 HFLGLAGIPRRYSDYPD 431
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17


>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 381 HFLGLAGIPRRYSDYPD 431
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17


>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 381 HFLGLAGIPRRYSDYPD 431
           HFLGLAG PRRYSD+ D
Sbjct: 1   HFLGLAGFPRRYSDFAD 17


>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +2

Query: 284 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNT 406
           + FIY   + FL +KN  F+  YW+   YN F        W T
Sbjct: 14  VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRT 56


>SB_43698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 360 NITFFPQHFLGLAGIPRRY 416
           +I F  +H+L + G+PRRY
Sbjct: 174 SIRFLVEHYLDIQGVPRRY 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,735,574
Number of Sequences: 59808
Number of extensions: 180693
Number of successful extensions: 257
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)