Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0551
         (630 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    25   0.52 
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    25   0.69 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    24   0.91 
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   6.4  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 10  ISHVTIHNVKISNFFQQAADSQLAQCNTN*VPVKWGD*R 126
           +    +  +  ++++ +  + Q  QCN N  PVK G+ R
Sbjct: 463 LGRAVVPTLDATSYYAKDLEKQRQQCNQNKCPVKRGNGR 501


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 547 IRNILNIKKRKVLKYLTIRHLFIYKINLK-TSFY 449
           IR+ LNI    VL    I H+F++ +  K  SFY
Sbjct: 41  IRSFLNITASAVLLPFAIYHIFMHIVPTKLISFY 74


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -3

Query: 592 FKELSVFLYPIG*KYIRNILNIKKRKVLKYLTIRHLFIYKINLKTSFYFYYIFYNSG-VN 416
           F +L + LY I      N    ++   +  L +  +F Y I L T +Y YY  + +  +N
Sbjct: 115 FGKLLINLYTIN----YNFKESERNDYVSLLQLVFVFCYFIYLFTVYYIYYSVHEASIIN 170

Query: 415 F 413
           F
Sbjct: 171 F 171


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 354 YYKNVLIQILKCIGY 398
           YYK+V ++ LK +GY
Sbjct: 223 YYKDVDLKALKKLGY 237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,163
Number of Sequences: 336
Number of extensions: 2677
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)