Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0551
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    26   5.2  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   9.0  

>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 207 QDSIILILI*HFNHQQLP*NCSSSWD 130
           Q +++++   HF H  +  +CS  WD
Sbjct: 322 QGAVLIVKTVHFRHAHVLVHCSDGWD 347


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = -3

Query: 538 ILNIKKRKVLKYLTIRHLFIYKINLK----TSFYFYYIFYNSGVNFNI 407
           +LN++  + +++  I+ +F Y++NL       FY +Y+  N     NI
Sbjct: 440 LLNLENEESVEWRLIKKVFEYRLNLDLYILKQFYCHYLDRNRKPPLNI 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,868
Number of Sequences: 5004
Number of extensions: 43159
Number of successful extensions: 61
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)