Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0551
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin p...    28   6.3  
AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin p...    28   6.3  

>U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical
           protein PAR2.4b protein.
          Length = 606

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +3

Query: 54  SASCRLTTGSM*H*LGTGKMGRLETNPNLMNNFKVVVDD 170
           S  CRL TG +   L    M  L  N N  NNF +  DD
Sbjct: 21  SGRCRLDTGML---LSQPAMHALMNNRNACNNFALAADD 56


>U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical
           protein PAR2.4a protein.
          Length = 804

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +3

Query: 54  SASCRLTTGSM*H*LGTGKMGRLETNPNLMNNFKVVVDD 170
           S  CRL TG +   L    M  L  N N  NNF +  DD
Sbjct: 219 SGRCRLDTGML---LSQPAMHALMNNRNACNNFALAADD 254


>AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin
           polymerizing factor-S protein.
          Length = 606

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +3

Query: 54  SASCRLTTGSM*H*LGTGKMGRLETNPNLMNNFKVVVDD 170
           S  CRL TG +   L    M  L  N N  NNF +  DD
Sbjct: 21  SGRCRLDTGML---LSQPAMHALMNNRNACNNFALAADD 56


>AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin
           polymerizing factor protein.
          Length = 804

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +3

Query: 54  SASCRLTTGSM*H*LGTGKMGRLETNPNLMNNFKVVVDD 170
           S  CRL TG +   L    M  L  N N  NNF +  DD
Sbjct: 219 SGRCRLDTGML---LSQPAMHALMNNRNACNNFALAADD 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,559,212
Number of Sequences: 27780
Number of extensions: 231231
Number of successful extensions: 435
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)