Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0550
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    56   3e-09
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    56   3e-09
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    28   1.3  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    27   1.7  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    27   2.3  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    27   3.0  
SPAC824.03c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.0  
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    26   4.0  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    26   5.3  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    26   5.3  
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    25   7.0  
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ...    25   9.3  

>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
 Frame = +1

Query: 256 VDLYIMGDTSYASCCIDSVAAMHVQANGIVHYGHKCF---SKTDIPVYMVLPKEKLDFDA 426
           V+  +MGD +Y +CCID   A  +  + +VHYGH C     +T I V  V    K+D   
Sbjct: 117 VETIVMGDVTYGACCIDDFTARALDCDFLVHYGHSCLIPVDQTPIKVLYVFVDIKIDLQH 176

Query: 427 AINTLKEKYDSDDNMKL 477
            +++LK    S+  + L
Sbjct: 177 VVSSLKHNLPSNSRLAL 193



 Score = 28.3 bits (60), Expect = 1.00
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 128 NFDIKETCKWIERKKFAKVCLQFPDDLLEVSC 223
           NF+I +T   I  +K  +V LQ P+ LL   C
Sbjct: 74  NFEIHKTIWHIRLRKAKRVALQLPEGLLMFGC 105


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
 Frame = +1

Query: 259 DLYIMGDTSYASCCIDSVAAMHVQANGIVHYGHKCFSKTD-IPVYMV 396
           ++ I+ DT+Y SCC+D VAA H+ A+ IVHYG  C S T  +PV  V
Sbjct: 80  NVQILADTNYGSCCVDEVAAEHMSADAIVHYGRACLSPTSRLPVLYV 126



 Score = 31.9 bits (69), Expect = 0.081
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +2

Query: 98  KTEGYDDIITNFDIKETCKWIERKKFAKVCLQFPDDLLEVSCKVYKEIKDRIE 256
           K EG  D++  ++I  T  +I+   +  V LQFPD+ L  S KV   + + +E
Sbjct: 28  KIEG--DLVEVYEINRTVDFIKSGNYNSVALQFPDEHLADSGKVASILTNLVE 78


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 535 NHFRVIFSLSVQILHHKRGITSCCHQNHIFLSMYLLLHQNPVFLL 401
           N++  I S+ ++  H      +   Q  IF+  YLL H  P FL+
Sbjct: 192 NNYTPIESIDLRAGHVSFNFVNSLKQTFIFMQPYLLSHMFPQFLV 236


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 178 RKLFSFD-PFACFLYIKIGDYIVITFSFIYCYLTCYTYFVFCSKIPHF 38
           RKL   D PF   ++  I D+IV   S    +   Y +F FC  +P F
Sbjct: 447 RKLSGIDDPFRYIVFNDIQDFIVCFESETIAFAFKYKFFAFCG-VPLF 493


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 136 IKIGDYIVITFSFIYCYLTCYTYF 65
           I+I  YI +  SFIYC +  +T F
Sbjct: 138 IRILYYIYVAVSFIYCVMAFFTIF 161


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/59 (23%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = +2

Query: 38  KMGNFTTEDKICITREITVN--KTEGYDDIITNFDIKETCKWIERKKFAKVCLQFPDDL 208
           ++ N   E+KI    E T++  K+E + D+    ++++  ++ +++K  +  L+FPD++
Sbjct: 420 EISNHVAEEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQEELEFPDEV 478


>SPAC824.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 329 RPMELCIMVTNAFQKLIYQFTW 394
           RP+ LC +  + F   ++QF W
Sbjct: 155 RPLALCRIYVDGFHSYMFQFVW 176


>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 531 WFQKYPKSYICHIELEDKPE 590
           W     KSY+C+I+LE  PE
Sbjct: 248 WAAICNKSYMCNIQLEQSPE 267


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 122 ITNFDIKETCKWIERKKFAKVCLQFPDDLLEVSCKVYKEIKD 247
           I  +D  + CK IE  K       FPD    + C    EIK+
Sbjct: 122 IAAYDEGKLCKSIEESKLGVSQSFFPDVTKRLPCSCLSEIKN 163


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 442 KEKYDSDDNMKLCLFYGAEFEHSMKISPENGFKNIQRV 555
           K++Y+ D      + YG +F+H +   PE+ F+   R+
Sbjct: 77  KKEYNGDQ-----VIYGTQFDHMISTFPESAFRAGMRI 109


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
 Frame = +2

Query: 26  IVKNKMGNFTTEDKICITREITVNKTEGYDDIITNFDIKETCKWIERKKFAKVCLQFPDD 205
           I K K+G F     I   REI   +   +D++I   D+  T      K    + L+F D 
Sbjct: 39  IKKIKVGQFKDGIDISALREIKFLRESRHDNVIELVDVFST------KSNLNIILEFLDS 92

Query: 206 LLEVSCK----VYKEIKDRIELTCILWEIHHM 289
            LE+  K    V++    +  +  +L  +HH+
Sbjct: 93  DLEMLIKDKFIVFQPAHIKSWMVMLLRGLHHI 124


>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 519 ITRKWFQKYPKSYICHIELEDKPERFL 599
           ++  W  +YP  Y  H+   D  ER++
Sbjct: 18  VSSAWLTRYPNPYSLHVVSADVLERYV 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,456
Number of Sequences: 5004
Number of extensions: 65714
Number of successful extensions: 193
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)