Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0550
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0017 + 8990852-8990938,8991056-8991243,8991687-8991795,899...    82   3e-16
02_05_1210 - 34954006-34955412                                         42   6e-04
01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-19...    31   1.0  
02_05_0825 - 32042128-32042238,32042905-32043246,32043548-32043727     30   1.8  
04_03_0073 - 10702352-10702619,10702702-10702836,10702915-10703594     29   3.1  
07_01_0632 + 4729426-4731300                                           28   5.5  
08_02_0754 - 20810449-20810517,20810965-20811036,20811145-208112...    27   9.6  
01_06_0869 - 32591669-32591794,32591923-32592075,32592293-325923...    27   9.6  

>11_03_0017 +
           8990852-8990938,8991056-8991243,8991687-8991795,
           8992448-8992832,8993240-8993309,8993410-8993477,
           8995009-8995124,8995211-8995317,8995488-8995627,
           8995794-8996044
          Length = 506

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
 Frame = +1

Query: 256 VDLYIMGDTSYASCCIDSVAAMHVQANGIVHYGHKCFSKT-DIPVYMVLPKEKLDFDAAI 432
           V L++M DT+Y SCC+D V A H+ A  +VHYGH C S T ++P + V  K  LD DA  
Sbjct: 54  VKLFVMADTAYNSCCVDEVGASHIDAQCVVHYGHACMSPTSNLPAFFVFGKTPLDTDACG 113

Query: 433 NTLKEKYDSDDNMKLCLFYGAEFEHSM 513
            +L E    + + ++ +FYG E+ H++
Sbjct: 114 RSLLE-CSRESDKRILVFYGLEYAHAL 139



 Score = 35.9 bits (79), Expect = 0.027
 Identities = 13/44 (29%), Positives = 27/44 (61%)
 Frame = +2

Query: 113 DDIITNFDIKETCKWIERKKFAKVCLQFPDDLLEVSCKVYKEIK 244
           DDI   +++  T ++I  + + +V LQFPD++L  +  V + ++
Sbjct: 3   DDIDARYEVPRTAEFIRARAYTRVALQFPDEMLRDAAAVAQALR 46


>02_05_1210 - 34954006-34955412
          Length = 468

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
 Frame = +1

Query: 259 DLYIMGDTSYASCCIDSVAAMHVQANGIVHYGHKCF---SKTDIPVYMVLPKEKLDFDAA 429
           D+ I+ D +Y +CC+    A  + A+ +VHYGH C    + + +PV  V  + ++D    
Sbjct: 107 DVLILADPTYGACCLADRPAKALAADVLVHYGHSCLVPVTSSLLPVLYVFVEIRVDAQRL 166

Query: 430 INTLKEKY-DSDDNMKLCLFYGAEF 501
            + ++  + D  D  +L +    +F
Sbjct: 167 ADAVRAAFPDPADAPRLAIAGTVQF 191


>01_01_0025 +
           188915-189132,190625-190705,191350-191506,191958-192161,
           192248-192356,192401-192496,192724-193994,194200-194384,
           194619-195055,197034-197077,197830-199036,199253-199479
          Length = 1411

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
 Frame = +2

Query: 170 KFAKVCLQFPDDLLEVSCKVYKEIKDRIELT-------CILWEIHHMLAVV*ILWQLCMC 328
           KFA  C          SC +Y  IK+ IE         C  +E  H++    I W  C  
Sbjct: 372 KFANTCHNMLSKTPGASCNLYDRIKELIECVQQNASQYCSTYEFFHLIMCACISWYACKT 431

Query: 329 R 331
           R
Sbjct: 432 R 432


>02_05_0825 - 32042128-32042238,32042905-32043246,32043548-32043727
          Length = 210

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -3

Query: 502 QILHHKRGITSCCHQNHI 449
           Q+LH + G++SCC+Q H+
Sbjct: 182 QLLHQQCGLSSCCNQRHL 199


>04_03_0073 - 10702352-10702619,10702702-10702836,10702915-10703594
          Length = 360

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +2

Query: 311 WQLCMCRPMELCIMVTNAFQKLIYQFTWYCQKKNWIL 421
           WQ C     E+  +        IY   W+C+ K +I+
Sbjct: 230 WQWCQKNAPEVAFLDRQGMVNYIYDTLWFCRDKEYIM 266


>07_01_0632 + 4729426-4731300
          Length = 624

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -3

Query: 166 SFDPFACFLYIKIG 125
           S DPF CFLYI IG
Sbjct: 239 SVDPFFCFLYISIG 252


>08_02_0754 -
           20810449-20810517,20810965-20811036,20811145-20811252,
           20811326-20811378,20811401-20811514,20812833-20812962
          Length = 181

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 421 DAAINTLKEKYDSDDNMKLCLFYG 492
           D  ++ LKEK+D+ +N    LFYG
Sbjct: 90  DEILSELKEKWDAIENKSSVLFYG 113


>01_06_0869 -
           32591669-32591794,32591923-32592075,32592293-32592367,
           32592467-32592597,32593788-32593896,32594745-32594936
          Length = 261

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 513 ENITRKWFQKYPKSYICHIELE-DKPERFLGRIIKDV 620
           ENI  K F++ P   + ++  E D+PE+FL  I+ D+
Sbjct: 194 ENILFKLFERQPNWSLKNLMQETDQPEQFLKEILNDL 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,838,876
Number of Sequences: 37544
Number of extensions: 345066
Number of successful extensions: 797
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)