Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0550
(642 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37985| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 5e-11
SB_33893| Best HMM Match : Astacin (HMM E-Value=0.0004) 29 2.4
SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06) 29 4.2
SB_58287| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_42627| Best HMM Match : DUF164 (HMM E-Value=0.33) 28 5.6
SB_39015| Best HMM Match : Lectin_C (HMM E-Value=3.2e-28) 28 5.6
SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08) 28 7.4
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 27 9.8
SB_23758| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_10321| Best HMM Match : Urotensin_II (HMM E-Value=6) 27 9.8
>SB_37985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 64.9 bits (151), Expect = 5e-11
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +1
Query: 265 YIMGDTSYASCCIDSVAAMHVQANGIVHYGHKCFSKTD-IPVYMVLPKEKLDFDAAINTL 441
+I+ DTSY SCC+D +AA H A I+HYG C S+T +PV V K ++
Sbjct: 97 FILADTSYGSCCVDEIAAEHADAELIIHYGQACLSQTKRLPVLYVFGKNPINVIECSQHF 156
Query: 442 KEKYDSDDNMKLCLFYGAEFEH 507
++ Y D +++ +FY + H
Sbjct: 157 RQLY-PDTGIRVLVFYDVVYNH 177
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +2
Query: 83 EITVNKTEGYDDIITNFDIKETCKWIERKKFAKVCLQFPDDLLEVSCKVYKEIKDR 250
++ KTE + ++ ++I+ + + I F KV LQFPD LL S V + I+ R
Sbjct: 36 DVPSTKTESIERMVEVYEIERSVQVITSSGFNKVALQFPDSLLADSASVARLIEQR 91
>SB_33893| Best HMM Match : Astacin (HMM E-Value=0.0004)
Length = 127
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 340 IVHYGHKCFSKTDIPVYMVLPKEKLDFDAAINTLKEKYDSDDNMKLCLFYGAE 498
++HYG+ FSK P + + L F A +TL + D ++L Y E
Sbjct: 26 VMHYGNTAFSKNGKPTMISIKDPNLQFGATRSTLSD----TDKIQLNALYDCE 74
>SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06)
Length = 1160
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +1
Query: 262 LYIMGDTSYASC-CIDSVAAMHVQANGIVH 348
L GD Y C C D V +HV++ ++H
Sbjct: 906 LQFSGDEEYLFCSCTDKVQVLHVESGKVIH 935
>SB_58287| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1021
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 388 YMVLPKEKLDFDAAINTLKEKYDSDDNMKLCL 483
+ +L +E+ F+ +N L+E+YD + KLC+
Sbjct: 102 FSLLTEERTAFEERLNILQEEYDRVIDEKLCI 133
>SB_42627| Best HMM Match : DUF164 (HMM E-Value=0.33)
Length = 412
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 382 PVYMVLPKEKLDFDAAINTLKEKYDSDDNMKLCLFY 489
P++ L +EK+ D T+ Y +DN + C FY
Sbjct: 202 PIFFRLLREKVSLDGEGFTILNMYTPNDNKQQCDFY 237
>SB_39015| Best HMM Match : Lectin_C (HMM E-Value=3.2e-28)
Length = 856
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 347 IMVTNAFQKLIYQFTWYCQKKN 412
+ +T A LIY+FTW KKN
Sbjct: 357 VQLTRALNDLIYRFTWLGLKKN 378
>SB_9776| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-08)
Length = 409
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 80 REITVNKTEGYDDIITNFDIKETCKWIERKKFAKVCLQFP 199
R + ++ Y ++ +KE K ++ KKF+K CL+ P
Sbjct: 319 RHVGISVLHDYGAELSEEKMKEYMKALKTKKFSKFCLRHP 358
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 27.5 bits (58), Expect = 9.8
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = -3
Query: 121 YIVITFSFIYCYLTCYTYFVFC 56
Y + + YCY CY Y +C
Sbjct: 478 YYCYCYCYYYCYYYCYCYCYYC 499
>SB_23758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 20 KTIVKNKMGNFTTEDKICITREITVNKTEGY 112
+T+V + GN T EDK C+ + + +T Y
Sbjct: 194 RTLVPDLYGNLTNEDKACVDNWLDLAQTLHY 224
>SB_10321| Best HMM Match : Urotensin_II (HMM E-Value=6)
Length = 200
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 379 YQFLKSICDHNAQFHWPAHA*LPQN 305
Y F +S C+ +FHW + LP N
Sbjct: 29 YDFTESYCNERGRFHWTNNNHLPCN 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,510,453
Number of Sequences: 59808
Number of extensions: 434146
Number of successful extensions: 1020
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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