Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0550
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    50   2e-06
Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical pr...    46   2e-05
U41559-3|AAC24262.1|  334|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AL161712-6|CAC70141.1|  248|Caenorhabditis elegans Hypothetical ...    29   2.8  
U55364-2|AAN84822.2|  317|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF077540-7|AAC26307.2|  314|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +1

Query: 265 YIMGDTSYASCCIDSVAAMHVQANGIVHYGHKCFS 369
           +++ DTSY SCC+D VAA H     +VH+G  C S
Sbjct: 91  FVLADTSYRSCCVDEVAAAHADCTALVHFGEACHS 125



 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 20/46 (43%), Positives = 29/46 (63%)
 Frame = +2

Query: 113 DDIITNFDIKETCKWIERKKFAKVCLQFPDDLLEVSCKVYKEIKDR 250
           +DI + F+I  T +WI++    ++ LQFPD LL  S KV K I+ R
Sbjct: 36  NDIHSFFEIDATSEWIKQGNHQRIALQFPDSLLPYSEKVTKLIESR 81


>Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical
           protein C14B1.5 protein.
          Length = 396

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
 Frame = +1

Query: 259 DLYIMGDTSYASCCIDSVAAMHVQANGIVHYGHKC---FSKTD-IPVYMVLPKEKLDFDA 426
           D  IMGD +Y +CC+D   A  +  + +VHYGH C      TD I +  V     ++   
Sbjct: 77  DTVIMGDVTYGACCVDDYTAKSMGCDLLVHYGHSCLVPIQNTDGIAMLYVFVNIHINLSH 136

Query: 427 AINTLKEKY 453
            I+ +KE +
Sbjct: 137 LIDCVKENF 145


>U41559-3|AAC24262.1|  334|Caenorhabditis elegans Hypothetical
           protein C26B2.6 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
 Frame = +1

Query: 286 YASCCIDSVAAMHVQANGIVHYGHKCF--SKTDIPVYM-VLPKEKLDFDAAINTLKEKY- 453
           Y S C  S       A G+ H+GH+CF    T+ P  + ++P  +   D     +     
Sbjct: 48  YRSRCYGSYLIRSFLAEGL-HHGHRCFIADPTEDPKEINLIPSRRTSTDMQNQEIPNSLP 106

Query: 454 -DSDDNMKLCLFYGAEFEHSMKISP 525
            +++++MK+   YG   + S  + P
Sbjct: 107 AENENSMKIAWRYGNVKQVSSSLGP 131


>AL161712-6|CAC70141.1|  248|Caenorhabditis elegans Hypothetical
           protein Y66D12A.9 protein.
          Length = 248

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 340 IVHYGHKCFSKTDIPVYMVLPKEKLDFDAAINTLKEKYD 456
           +V Y  K F++ +  V    PK+ ++FDA + + K  YD
Sbjct: 13  LVEYKQKLFAEAERLVKEEFPKKVIEFDALLKSPKLSYD 51


>U55364-2|AAN84822.2|  317|Caenorhabditis elegans Hypothetical
           protein F21C10.9 protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +1

Query: 364 FSKTDIPVYMVLPKEKLDFDAAINTLKEKYDSDDNMKLCLFY 489
           + K D  + +    E  D D  I+ +   +  D+N K+C  Y
Sbjct: 190 YKKLDYTIGIAFFNESGDIDGVISAVPTGHQEDNNFKICHLY 231


>U39644-1|AAA80359.2|  393|Caenorhabditis elegans Hypothetical
           protein T10E10.3 protein.
          Length = 393

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 172 LFSFDPFAC-FLYIKIGDYIVITFSFIYCYLTCYTYFVFCSKIPHFI 35
           + S  P AC ++YI +   ++ +  ++Y  +   T  V CSK+ +FI
Sbjct: 278 IVSHIPSACLYVYINLFHNVLYSTRWMYTSVQVSTTVVTCSKVANFI 324


>AF077540-7|AAC26307.2|  314|Caenorhabditis elegans Hypothetical
           protein T07H3.6 protein.
          Length = 314

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 29  VKNKMGNFTTEDKICITREITVNKTEGYD-DIITNFDIKE 145
           +KNK+ +   +D + +  E+T+ KT G+D   + NFD  E
Sbjct: 124 IKNKIFD---DDMVYVDVEVTITKTSGFDRKKLRNFDTPE 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,851,632
Number of Sequences: 27780
Number of extensions: 359402
Number of successful extensions: 1182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)