Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0550
         (642 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59630.1 68416.m06653 diphthamide synthesis DPH2 family prote...    72   4e-13
At5g62030.1 68418.m07786 diphthamide synthesis DPH2 family prote...    53   2e-07
At5g35753.1 68418.m04282 expressed protein                             29   2.0  
At2g36380.1 68415.m04464 ABC transporter family protein related ...    29   2.6  
At2g31130.1 68415.m03801 expressed protein                             28   6.1  
At4g00490.1 68417.m00067 beta-amylase, putative / 1,4-alpha-D-gl...    27   8.0  

>At3g59630.1 68416.m06653 diphthamide synthesis DPH2 family protein 
           contains InterPro accession IPR002728: Diphthamide
           synthesis DPH2 protein
          Length = 491

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
 Frame = +1

Query: 256 VDLYIMGDTSYASCCIDSVAAMHVQANGIVHYGHKCFSKTDI-PVYMVLPKEKLDFDAAI 432
           V  ++M DT+Y SCCID V A+H+ +  +VHYG  C S T + P + V  K  ++  + +
Sbjct: 57  VRFFVMADTTYGSCCIDEVGALHIDSECVVHYGQTCLSPTSVLPAFFVFGKASINVSSCV 116

Query: 433 NTLKEKYDSDDNMKLCLFYGAEFEH 507
             L + Y S  +  + + YG E+ H
Sbjct: 117 KHLID-YASKSDKPIMILYGLEYAH 140



 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 17/45 (37%), Positives = 28/45 (62%)
 Frame = +2

Query: 125 TNFDIKETCKWIERKKFAKVCLQFPDDLLEVSCKVYKEIKDRIEL 259
           + ++I  T ++I  K F ++ LQFPD+LL+ S KV   +K +  L
Sbjct: 7   SKYEINRTAEFIISKSFTRIALQFPDELLKDSTKVVSALKSKTRL 51


>At5g62030.1 68418.m07786 diphthamide synthesis DPH2 family protein 
           contains InterPro accession IPR002728: Diphthamide
           synthesis DPH2 protein
          Length = 453

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = +1

Query: 265 YIMGDTSYASCCIDSVAAMHVQANGIVHYGHKC---FSKTDIPVYMVLPKEKLDFDAAIN 435
           +++GD +Y +CC+D  +A  + A+ ++HYGH C      T IP   V  + ++D    +N
Sbjct: 95  FVLGDVTYGACCVDDFSACALGADLLIHYGHSCLVPIDSTKIPCLYVFVEIQIDVKCLLN 154

Query: 436 TLKEKYDSD 462
           T+     SD
Sbjct: 155 TIHLNLASD 163


>At5g35753.1 68418.m04282 expressed protein
          Length = 592

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 98  KTEGYDDIITNFDIKETCKWIERKKFAKVCLQFPDDLL-EVSCKV 229
           K +GY  +    D +E+ KWI R++  +   Q P   L E +C V
Sbjct: 524 KVDGYKTVYCRRDKEESKKWIPRREMLRFSHQVPSRFLKEETCGV 568


>At2g36380.1 68415.m04464 ABC transporter family protein related to
            multi drug resistance proteins and P-glycoproteins
          Length = 1453

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -3

Query: 154  FACFLYIKIG-DYIVITFSFIYCY-LTCYTYF 65
            +   LY  IG D+ V+ F + Y Y LTC+ YF
Sbjct: 1294 YTLILYSMIGYDWTVVKFFWFYYYMLTCFVYF 1325


>At2g31130.1 68415.m03801 expressed protein
          Length = 419

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 137 IKETCKWIERKKFAKVCLQFPDDLLEVSCKVYKEIKDRI 253
           ++E+C  ++R +F  V   FPD +     K YK+I+D I
Sbjct: 333 VEESCILVDRDEFHSV---FPDKMENDKHKPYKKIRDAI 368


>At4g00490.1 68417.m00067 beta-amylase, putative /
           1,4-alpha-D-glucan maltohydrolase, putative similar to
           beta-amylase from SP:O64407 [Vigna unguiculata];
           contains Pfam profile PF01373: Glycosyl hydrolase family
           14
          Length = 553

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 19/82 (23%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
 Frame = +1

Query: 340 IVHYGHKCFSKTD-IPVYMVLPKEKLDFDAAINTLKEKYD--------SDDNMKLCLFYG 492
           IVH+  + F+ T  +PVY++LP   +D ++ +   +E  D        + D + +  ++G
Sbjct: 92  IVHFEERDFAGTACVPVYVMLPLGVIDMNSEVVEPEELLDQLRTLKSVNVDGVMVDCWWG 151

Query: 493 AEFEHSMKISPENGFKNIQRVI 558
               H+ ++   +G+K + ++I
Sbjct: 152 IVESHTPQVYNWSGYKKLFQMI 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,574,605
Number of Sequences: 28952
Number of extensions: 313857
Number of successful extensions: 782
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)