Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0549
         (626 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q18EB2 Cluster: Putative uncharacterized protein; n=2; ...    37   0.34 
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    33   7.4  

>UniRef50_Q18EB2 Cluster: Putative uncharacterized protein; n=2;
           Haloquadratum walsbyi DSM 16790|Rep: Putative
           uncharacterized protein - Haloquadratum walsbyi (strain
           DSM 16790)
          Length = 238

 Score = 37.1 bits (82), Expect = 0.34
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 422 ISRWVAHLHCSCLWAPVTT*HQVGCELLHRSKKKKPSIKTRSVVC 288
           +S W+   HC   W+P T   + GC   H ++   PS  T   VC
Sbjct: 182 VSVWITCQHCGDRWSPATFLDESGCRCAHDTESSGPSTDTSVDVC 226


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 32.7 bits (71), Expect = 7.4
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +3

Query: 336 VKQLTAHLVSSGYWSP 383
           V +LTAHLV SGYWSP
Sbjct: 160 VDELTAHLVLSGYWSP 175


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,822,463
Number of Sequences: 1657284
Number of extensions: 12150894
Number of successful extensions: 21113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21112
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)