Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0549
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   1.7  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    25   6.8  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    25   9.0  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 356  PGVKWLLEPIDNYNVNAPPTLKYKF*GLNAYNGCPTLQT 472
            PG KW L+   NY +  P T+  K      Y+  PT+ +
Sbjct: 2411 PGYKWFLKDAANYGL-PPITMNVKVNDTGDYSNIPTVSS 2448


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +1

Query: 385 RQLQCKCATHLEI*VLRSQCLQRLPHPSNQKALLHHGRNRLTVVLIRADSK 537
           +Q +C     L+  VL    +   P PS+ K ++HH    L  + +  D +
Sbjct: 508 KQDKCSGRDDLDNSVLNDDYISVAPKPSHVKNIMHHENQYLQALQLVEDER 558


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 445 LQRLPHPSNQKALLHHGRNRLTVVLIRADSKKVLPPIIGFSS 570
           ++RL H   +K  L H    LT+     DS +  PP IG ++
Sbjct: 172 IERLLHGITEKEELQHIYKILTLTPASLDSFQNRPPYIGITT 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,159
Number of Sequences: 5004
Number of extensions: 51968
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)