Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0549
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59566| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_26159| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_13194| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_11938| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_19702| Best HMM Match : RVT_1 (HMM E-Value=0.0029)                  30   1.8  
SB_5870| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_50552| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00012)         27   9.4  

>SB_59566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 200 VTCDSVLI-LDNVSISFKRILMTCHRILLIFTYVRFLVPYVI 78
           +T D VL+ LD V ++  R+L+T HR+LL    V   +  V+
Sbjct: 84  LTLDRVLLTLDRVLLTLDRVLLTLHRVLLTLDRVLLTLDRVL 125



 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 200 VTCDSVLI-LDNVSISFKRILMTCHRILLIFTYVRFLVPYVI 78
           +T D VL+ LD V ++  R+L+T HR+LL    V   +  V+
Sbjct: 133 LTLDRVLLTLDRVLLTLDRVLLTLHRVLLTLDRVLLTLDRVL 174


>SB_26159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 200 VTCDSVLILDNVSISFKRILMTCHRILLIFTYVRFLVPYVI 78
           +T D VL LD V ++  R+L+T  R+LL    V   +  V+
Sbjct: 159 LTLDRVLTLDRVLLTLDRVLLTLDRVLLTLDRVLLTLDRVL 199


>SB_13194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 170 NVSISFKRILMTCHRILLIFTYVRFLVPYV 81
           +V++ +    + CHR+L+++ YV   VPYV
Sbjct: 195 DVTVPYVDGTVPCHRMLMLYVYVDVTVPYV 224


>SB_11938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 170 NVSISFKRILMTCHRILLIFTYVRFLVPYV 81
           +V++ +    + CHR+L+++ YV   VPYV
Sbjct: 195 DVTVPYVDGTVPCHRMLMLYVYVDVTVPYV 224


>SB_19702| Best HMM Match : RVT_1 (HMM E-Value=0.0029)
          Length = 451

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 450 TAAPPFKPESITASRQK*ADGGTYPCGLKK 539
           T A PF+PE  T  R++  DG  Y   LKK
Sbjct: 354 TLALPFQPEERTFLREEKVDGAVYEVSLKK 383


>SB_5870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 350 CELLHRSKKKKPSIKTRSVVCYKSGSDVDRVTTR 249
           CEL  RS++  P      VVCY S + V  VT R
Sbjct: 73  CELNGRSRRTNPCTSRLKVVCYISKAFVAMVTMR 106


>SB_50552| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00012)
          Length = 966

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 156 TYRYIIQYKDRVARHTSRKPPK 221
           T  YII+ K+R+  HTS + PK
Sbjct: 473 TKEYIIKLKERILNHTSAQYPK 494


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,167,797
Number of Sequences: 59808
Number of extensions: 390470
Number of successful extensions: 729
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)