Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0549
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z18264-1|CAA79148.1|  159|Caenorhabditis elegans ORF1 protein.         30   1.6  
Z11115-16|CAA77458.2|  159|Caenorhabditis elegans Hypothetical p...    30   1.6  
S66164-1|AAB28512.3|  159|Caenorhabditis elegans globin protein.       30   1.6  
AF016430-9|ABR92614.1|  199|Caenorhabditis elegans Hypothetical ...    28   4.8  
AF016430-8|AAK95868.2|  200|Caenorhabditis elegans Hypothetical ...    28   4.8  

>Z18264-1|CAA79148.1|  159|Caenorhabditis elegans ORF1 protein.
          Length = 159

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -1

Query: 242 YAHLLIYFRWFP*RVTCDSVLILDNVSISFKRILMTCHRILLIFTYVRFLVPYVIREKIN 63
           +  L +YF+    + T D V   +      +RIL+ CH +  ++T       YV RE IN
Sbjct: 42  FPDLRVYFKGAE-KYTADDVKKSERFDKQGQRILLACHLLANVYTNEEVFKGYV-RETIN 99

Query: 62  R 60
           R
Sbjct: 100 R 100


>Z11115-16|CAA77458.2|  159|Caenorhabditis elegans Hypothetical
           protein ZK637.13 protein.
          Length = 159

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -1

Query: 242 YAHLLIYFRWFP*RVTCDSVLILDNVSISFKRILMTCHRILLIFTYVRFLVPYVIREKIN 63
           +  L +YF+    + T D V   +      +RIL+ CH +  ++T       YV RE IN
Sbjct: 42  FPDLRVYFKGAE-KYTADDVKKSERFDKQGQRILLACHLLANVYTNEEVFKGYV-RETIN 99

Query: 62  R 60
           R
Sbjct: 100 R 100


>S66164-1|AAB28512.3|  159|Caenorhabditis elegans globin protein.
          Length = 159

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -1

Query: 242 YAHLLIYFRWFP*RVTCDSVLILDNVSISFKRILMTCHRILLIFTYVRFLVPYVIREKIN 63
           +  L +YF+    + T D V   +      +RIL+ CH +  ++T       YV RE IN
Sbjct: 42  FPDLRVYFKGAE-KYTADDVKKSERFDKQGQRILLACHLLANVYTNEEVFKGYV-RETIN 99

Query: 62  R 60
           R
Sbjct: 100 R 100


>AF016430-9|ABR92614.1|  199|Caenorhabditis elegans Hypothetical
           protein C05C8.1b protein.
          Length = 199

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +2

Query: 347 HSPPGVKWLLEPIDNYNV 400
           H+ PG++W+LE  +NY+V
Sbjct: 17  HNIPGLRWVLEGFNNYDV 34


>AF016430-8|AAK95868.2|  200|Caenorhabditis elegans Hypothetical
           protein C05C8.1a protein.
          Length = 200

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +2

Query: 347 HSPPGVKWLLEPIDNYNV 400
           H+ PG++W+LE  +NY+V
Sbjct: 17  HNIPGLRWVLEGFNNYDV 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,277,228
Number of Sequences: 27780
Number of extensions: 299920
Number of successful extensions: 518
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)