Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0549
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.4  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   7.4  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   7.4  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   7.4  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   7.4  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   7.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 420  NISSKVSMLTTAAPPFKPESITASRQ 497
            N+++  + LTT  PP K +S   S+Q
Sbjct: 955  NVTNVTTNLTTILPPVKVQSQQQSQQ 980


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 74   EKINRCLPNRK*RP 33
            E++N C PNR+  P
Sbjct: 1690 EELNHCAPNRRCPP 1703


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 377 EPIDNYNVNAPPTLKYKF*GLNAYNGCPTLQTR 475
           E I  +    PPT   +F   NAY   P+L  R
Sbjct: 370 EQIPRFRYIGPPTSFPRFIPPNAYRFRPSLNPR 402


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 377 EPIDNYNVNAPPTLKYKF*GLNAYNGCPTLQTR 475
           E I  +    PPT   +F   NAY   P+L  R
Sbjct: 370 EQIPRFRYIGPPTSFPRFIPPNAYRFRPSLNPR 402


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 377 EPIDNYNVNAPPTLKYKF*GLNAYNGCPTLQTR 475
           E I  +    PPT   +F   NAY   P+L  R
Sbjct: 370 EQIPRFRYIGPPTSFPRFIPPNAYRFRPSLNPR 402


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 583 VNISQS*IRLLVVGPFLSPHG*VPPSAYFCRDAV 482
           V+I +   RL  +GP  S    +PP+AY  R ++
Sbjct: 366 VSIQEQIPRLRYIGPPTSFPRFIPPNAYRFRPSL 399


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 377 EPIDNYNVNAPPTLKYKF*GLNAYNGCPTLQTR 475
           E I  +    PPT   +F   NAY   P+L  R
Sbjct: 359 EQIPRFRYIGPPTSFPRFIPPNAYRFRPSLNPR 391


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,745
Number of Sequences: 438
Number of extensions: 3987
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)