Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0548
         (631 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DD8576 Cluster: PREDICTED: similar to CG13722-PA...    33   7.5  
UniRef50_Q9HHA6 Cluster: Putative uncharacterized protein; n=2; ...    32   9.9  

>UniRef50_UPI0000DD8576 Cluster: PREDICTED: similar to CG13722-PA;
           n=1; Homo sapiens|Rep: PREDICTED: similar to CG13722-PA
           - Homo sapiens
          Length = 329

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 123 FIGLYIPIPTFRHPMIPTSVLRHE 52
           F  LY+P PTF H  +P S L H+
Sbjct: 97  FTHLYLPAPTFTHQYLPVSTLAHQ 120


>UniRef50_Q9HHA6 Cluster: Putative uncharacterized protein; n=2;
           Methanomicrobia|Rep: Putative uncharacterized protein -
           Methanosarcina thermophila
          Length = 180

 Score = 32.3 bits (70), Expect = 9.9
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -1

Query: 622 NLLLSKKLKKYERNESQDFRYLFFMFYCFV 533
           N ++ K LKK +RNE+  +R+L +  +CF+
Sbjct: 127 NQMIKKILKKIQRNEAGFYRFLHWFLHCFL 156


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 483,388,720
Number of Sequences: 1657284
Number of extensions: 7902628
Number of successful extensions: 14709
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14702
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46466611856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)