Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0547
         (626 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YAZ4 Cluster: Putative uncharacterized protein; n=1; ...    34   3.2  
UniRef50_Q21GG2 Cluster: Tetratricopeptide TPR_2; n=1; Saccharop...    33   5.6  
UniRef50_Q5C0A4 Cluster: SJCHGC09205 protein; n=1; Schistosoma j...    33   5.6  
UniRef50_Q24333 Cluster: Elastin like protein; n=1; Drosophila m...    33   5.6  
UniRef50_Q0P6N7 Cluster: Plasma memebrane H+-ATPase; n=1; Planta...    32   9.8  
UniRef50_Q9GT38 Cluster: Vacuolar-type H+ pumping pyrophosphatas...    32   9.8  
UniRef50_Q86SD1 Cluster: Calumenin homologue; n=2; Eukaryota|Rep...    32   9.8  

>UniRef50_Q4YAZ4 Cluster: Putative uncharacterized protein; n=1;
          Plasmodium berghei|Rep: Putative uncharacterized
          protein - Plasmodium berghei
          Length = 89

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +2

Query: 2  SIEVAAALRLVDPPGCRDNL 61
          S  VAAAL LVDPPGCR+++
Sbjct: 10 STAVAAALELVDPPGCRNSI 29


>UniRef50_Q21GG2 Cluster: Tetratricopeptide TPR_2; n=1;
           Saccharophagus degradans 2-40|Rep: Tetratricopeptide
           TPR_2 - Saccharophagus degradans (strain 2-40 / ATCC
           43961 / DSM 17024)
          Length = 952

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 51  GTIWMNKNWYLGFLQFGPKFSYYNSCSQYLTVRNQYL 161
           GT+W+N ++ LG+  +  +F Y  S   Y  V N YL
Sbjct: 188 GTLWVNAHYMLGWTHY-KQFQYEKSLDSYANVLNTYL 223


>UniRef50_Q5C0A4 Cluster: SJCHGC09205 protein; n=1; Schistosoma
          japonicum|Rep: SJCHGC09205 protein - Schistosoma
          japonicum (Blood fluke)
          Length = 215

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = +2

Query: 2  SIEVAAALRLVDPPGCRDN 58
          S  VAAAL LVDPPGCR++
Sbjct: 4  STAVAAALELVDPPGCRNS 22


>UniRef50_Q24333 Cluster: Elastin like protein; n=1; Drosophila
          melanogaster|Rep: Elastin like protein - Drosophila
          melanogaster (Fruit fly)
          Length = 110

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = +2

Query: 2  SIEVAAALRLVDPPGCRDN 58
          S  VAAAL LVDPPGCR++
Sbjct: 3  STAVAAALELVDPPGCRNS 21


>UniRef50_Q0P6N7 Cluster: Plasma memebrane H+-ATPase; n=1;
          Plantago major|Rep: Plasma memebrane H+-ATPase -
          Plantago major (Common plantain)
          Length = 106

 Score = 32.3 bits (70), Expect = 9.8
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +2

Query: 11 VAAALRLVDPPGCRDN 58
          VAAAL LVDPPGCR++
Sbjct: 7  VAAALELVDPPGCRNS 22


>UniRef50_Q9GT38 Cluster: Vacuolar-type H+ pumping pyrophosphatase;
           n=3; Plasmodium|Rep: Vacuolar-type H+ pumping
           pyrophosphatase - Plasmodium falciparum
          Length = 1044

 Score = 32.3 bits (70), Expect = 9.8
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = -3

Query: 147 EPLSTVNTSCNMKIL----VQTVKNLNTNFYSSKLSLQP 43
           EP ST+N  CN KI+    +    N+N+N +  + ++QP
Sbjct: 566 EPFSTLNLECNTKIIDKKDINYFNNINSNMHVEESAMQP 604


>UniRef50_Q86SD1 Cluster: Calumenin homologue; n=2; Eukaryota|Rep:
           Calumenin homologue - Ciona intestinalis (Transparent
           sea squirt)
          Length = 308

 Score = 32.3 bits (70), Expect = 9.8
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = +2

Query: 2   SIEVAAALRLVDPPGCR 52
           S  VAAAL LVDPPGCR
Sbjct: 123 STAVAAALELVDPPGCR 139


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 514,818,144
Number of Sequences: 1657284
Number of extensions: 8997622
Number of successful extensions: 16707
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16703
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)