Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0547
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    27   2.9  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    26   3.9  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    25   6.8  

>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -3

Query: 162 LNIDFEPLSTVNTS---CNMKILVQTVKNL 82
           LNIDFEP   +NTS   C+ K   + +  L
Sbjct: 107 LNIDFEPFKPINTSQYLCDNKFHTEALAEL 136


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = -3

Query: 168 STLNIDFEPLSTVNTSCNMKILVQTVKNLNTNFYSSKLSLQPGGSTSLRAAATSI 4
           STL I  +PL   NTS +      T +N NT    +++SL  G +T+  +   S+
Sbjct: 86  STLTISSQPLIHTNTSISKPSQTATPQNTNT----TQVSLTNGTTTNSYSNTNSL 136


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 132 VNTSCNMKILVQTVKNLNTNFYSSKLSLQPGGSTS 28
           +N +  M +L+  V     +F+SS   L+P GS S
Sbjct: 317 INAAWGMTVLLLDVLTEKLDFHSSSYQLKPFGSQS 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,441
Number of Sequences: 5004
Number of extensions: 41647
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)