Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0546
         (592 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0DWS1 Cluster: Chromosome undetermined scaffold_67, wh...    34   2.9  
UniRef50_Q6CB32 Cluster: Similarity; n=2; root|Rep: Similarity -...    33   6.6  
UniRef50_Q8IK23 Cluster: Putative uncharacterized protein; n=1; ...    32   8.7  

>UniRef50_A0DWS1 Cluster: Chromosome undetermined scaffold_67, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_67,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 216

 Score = 33.9 bits (74), Expect = 2.9
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = -2

Query: 375 LVIITMHFPFAV*FYLHLMFFFPIAQYKL-MYVXITIWFGILIFI*EI*KYLFESSQCYQ 199
           L +ITM + F++  YL+ +FF    +YKL  ++  T  F +++    +  Y+FES   YQ
Sbjct: 69  LALITMFYIFSL-IYLNAIFFLQFVEYKLPFFIDYTKNFTLMLIFSTL-LYVFESIMLYQ 126


>UniRef50_Q6CB32 Cluster: Similarity; n=2; root|Rep: Similarity -
           Yarrowia lipolytica (Candida lipolytica)
          Length = 281

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 25/77 (32%), Positives = 38/77 (49%)
 Frame = -2

Query: 378 ILVIITMHFPFAV*FYLHLMFFFPIAQYKLMYVXITIWFGILIFI*EI*KYLFESSQCYQ 199
           IL  I   F F+  F+    FFF I  +  +++ I I+  I IFI  I  ++F     + 
Sbjct: 20  ILYFIYFIFSFSY-FFFFFFFFFYIFIFIFIFIFIFIFIFIFIFI-FIFIFIFIFIFIFI 77

Query: 198 FKHILIY*QYLFHAHYF 148
           F  I I+  Y+F+  YF
Sbjct: 78  FIFIFIFIFYIFYILYF 94


>UniRef50_Q8IK23 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 284

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 400 FQRSPMHNSSNYYYA-FSFCCIVLFTFDVFFSYCTV 296
           F  + M+N SN +Y+ F F C+V++   +FF   TV
Sbjct: 33  FNSNKMNNKSNKFYSSFHFMCLVVYIISLFFITLTV 68


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 518,736,562
Number of Sequences: 1657284
Number of extensions: 9565984
Number of successful extensions: 19706
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19692
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41073165837
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)