Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0546
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...    29   0.38 
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   4.7  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   6.2  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    22   9.9  

>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 501 RNFSRTLLMQCFHFNIFLLRITSSSPIQS*YKHISKEA 388
           R+F R  LM CFH  + +L I      Q  +K  S+EA
Sbjct: 206 RSFIRNFLMHCFHKLLQILGIREIGDTQCGFKLFSREA 243


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +2

Query: 230  FYISQMKIKIPNQIVIXTYISLYCAIGKKNIKCK*NYTAKGKCIVIITRIMHWASL 397
            F+I     KI N +V+   IS+  ++G ++I C      +G  I +I+ I  +A L
Sbjct: 1307 FHILAYASKIENLLVLQCAISVVSSLGHEHISC---VLTQGAYIDLISCITKFAKL 1359


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 138 KYVRSSVHETDIVSILKC 191
           KYV SS +ETD+ +I  C
Sbjct: 575 KYVESSKYETDLKNIFDC 592


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 22.2 bits (45), Expect(2) = 9.9
 Identities = 7/38 (18%), Positives = 19/38 (50%)
 Frame = -1

Query: 367 YYYAFSFCCIVLFTFDVFFSYCTV*TYVCXDYNLVWNL 254
           ++  F   C +   +  FF++ ++   VC +   +W++
Sbjct: 233 FFTGFFLSCTISTKYVGFFTFLSIGLSVCLELWYLWDI 270



 Score = 20.6 bits (41), Expect(2) = 9.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 190 HFNILTIS 167
           HFNILTIS
Sbjct: 305 HFNILTIS 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,336,484
Number of Sequences: 5004
Number of extensions: 46890
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)