Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0546
         (592 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-367|AAF47577.2|  354|Drosophila melanogaster CG12023-PA...    29   4.7  
AY094692-1|AAM11045.1|  326|Drosophila melanogaster GH09240p pro...    29   6.2  
AE014134-1452|AAF52633.1|  326|Drosophila melanogaster CG7870-PA...    29   6.2  

>AE014296-367|AAF47577.2|  354|Drosophila melanogaster CG12023-PA,
           isoform A protein.
          Length = 354

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 201 QFKHILIY*QYLFHAHYF*HTSTVSIN*QDNDCQV 97
           QF H   + Q+L +  Y  HTST SI  Q ++C++
Sbjct: 244 QFLHDKHHFQHLNNHQYHHHTSTTSIRRQQHNCRI 278


>AY094692-1|AAM11045.1|  326|Drosophila melanogaster GH09240p
           protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 501 RNFSRTLLMQCFHFNIFLLRITSSSPIQS*YK 406
           R+F RT+LM  FHF ++L  + S    Q  +K
Sbjct: 209 RSFFRTILMHGFHFLVWLFAVRSIRDTQCGFK 240


>AE014134-1452|AAF52633.1|  326|Drosophila melanogaster CG7870-PA
           protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 501 RNFSRTLLMQCFHFNIFLLRITSSSPIQS*YK 406
           R+F RT+LM  FHF ++L  + S    Q  +K
Sbjct: 209 RSFFRTILMHGFHFLVWLFAVRSIRDTQCGFK 240


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,664,939
Number of Sequences: 53049
Number of extensions: 448041
Number of successful extensions: 814
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2379510885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)