Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0546
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023816-4|CAA19433.2|  344|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z68493-12|CAD89734.1|  121|Caenorhabditis elegans Hypothetical p...    28   4.3  
Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z93376-1|CAB07570.3|  472|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical...    28   5.7  
AL132949-41|CAC35868.2|  472|Caenorhabditis elegans Hypothetical...    28   5.7  

>AL023816-4|CAA19433.2|  344|Caenorhabditis elegans Hypothetical
           protein T05G11.6 protein.
          Length = 344

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -2

Query: 564 GAFLPTPSLKSIFRPSSRIF*RNFSRTLLMQCFHFNIFLLRITSSSPIQS*YKHISKEAQ 385
           G FL       + RP+ R F   F  T++  C  F +FL+ +T+       Y+     ++
Sbjct: 29  GGFLNLFHFAVLTRPALRTFTIYFFMTIIAICDFFRLFLVIVTALPSFYYTYQQSILPSE 88

Query: 384 CI 379
           CI
Sbjct: 89  CI 90


>Z68493-12|CAD89734.1|  121|Caenorhabditis elegans Hypothetical
           protein C33A12.19 protein.
          Length = 121

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -1

Query: 463 F*HFPITNYKFESNPE-LIQTYFQRSPMHNSSNYY 362
           F  F + N + ES P  L+  YF+    HNS N Y
Sbjct: 11  FLFFILLNVEIESRPNNLLDAYFKHRAAHNSINNY 45


>Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -1

Query: 565 WSFPSNTVIEKHIQT***NILKKLQ*NIAHAMFSF*HFPITNYKFESNPELIQTYFQRSP 386
           WSFP   +  KH QT    IL +L  NI      F  F ++  KF +    ++  +   P
Sbjct: 199 WSFPIFQMSRKHPQT----ILSRLTYNIFQQAELFRIFKVSPIKFFNFFHALEKGYWEIP 254

Query: 385 MHN 377
            HN
Sbjct: 255 YHN 257


>Z93376-1|CAB07570.3|  472|Caenorhabditis elegans Hypothetical
           protein E01F3.1a protein.
          Length = 472

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -1

Query: 565 WSFPSNTVIEKHIQT***NILKKLQ*NIAHAMFSF*HFPITNYKFESNPELIQTYFQRSP 386
           WSFP   +  KH QT    IL +L  NI      F  F ++  KF +    ++  +   P
Sbjct: 78  WSFPIFQMSRKHPQT----ILSRLTYNIFQQAELFRIFKVSPIKFFNFFHALEKGYWEIP 133

Query: 385 MHN 377
            HN
Sbjct: 134 YHN 136


>Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -1

Query: 565 WSFPSNTVIEKHIQT***NILKKLQ*NIAHAMFSF*HFPITNYKFESNPELIQTYFQRSP 386
           WSFP   +  KH QT    IL +L  NI      F  F ++  KF +    ++  +   P
Sbjct: 199 WSFPIFQMSRKHPQT----ILSRLTYNIFQQAELFRIFKVSPIKFFNFFHALEKGYWEIP 254

Query: 385 MHN 377
            HN
Sbjct: 255 YHN 257


>AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -1

Query: 565 WSFPSNTVIEKHIQT***NILKKLQ*NIAHAMFSF*HFPITNYKFESNPELIQTYFQRSP 386
           WSFP   +  KH QT    IL +L  NI      F  F ++  KF +    ++  +   P
Sbjct: 199 WSFPIFQMSRKHPQT----ILSRLTYNIFQQAELFRIFKVSPIKFFNFFHALEKGYWEIP 254

Query: 385 MHN 377
            HN
Sbjct: 255 YHN 257


>AL132949-41|CAC35868.2|  472|Caenorhabditis elegans Hypothetical
           protein E01F3.1a protein.
          Length = 472

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -1

Query: 565 WSFPSNTVIEKHIQT***NILKKLQ*NIAHAMFSF*HFPITNYKFESNPELIQTYFQRSP 386
           WSFP   +  KH QT    IL +L  NI      F  F ++  KF +    ++  +   P
Sbjct: 78  WSFPIFQMSRKHPQT----ILSRLTYNIFQQAELFRIFKVSPIKFFNFFHALEKGYWEIP 133

Query: 385 MHN 377
            HN
Sbjct: 134 YHN 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,821,861
Number of Sequences: 27780
Number of extensions: 259547
Number of successful extensions: 515
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)