Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0546
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    23   3.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   6.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   6.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.0  

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -1

Query: 421 PELIQTYFQRSPMHNSSNYYYAFSFCCIVLF 329
           P++I +   ++ +HN++NY Y ++  C  L+
Sbjct: 79  PKIISSLSNKT-IHNNNNYKYNYNNNCKKLY 108


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +1

Query: 319 HQM*IKLYSKRKMHSNNY*NYALGFFGNMFVSTLDWTRT 435
           H M    Y   ++  +N   Y    +G  FV  L WT T
Sbjct: 63  HMMLQFRYLDARLKFSNIAPYLNQIYGGQFVRDLIWTPT 101


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 584 LFSTMPLELSF 552
           LF+T+PL LSF
Sbjct: 143 LFATLPLRLSF 153


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 266 GLES*FSFEKYKNIYLN 216
           G+E   +F+KY NI +N
Sbjct: 169 GVEIGINFDKYDNIQVN 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,098
Number of Sequences: 438
Number of extensions: 3267
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)