Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0545
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    95   5e-21
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   7.9  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 95.5 bits (227), Expect = 5e-21
 Identities = 39/51 (76%), Positives = 46/51 (90%)
 Frame = +3

Query: 258 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHII 410
           +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPEVYILI+P FG++SHII
Sbjct: 215 MLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVVSHII 265



 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 32/82 (39%), Positives = 39/82 (47%)
 Frame = +1

Query: 10  G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 189
           G TVYPPLSS  +H G ++DLAI SL L GISS                   S  Q+PLF
Sbjct: 132 GWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLF 191

Query: 190 V*AVGITAFXXXXXXXXXAGAI 255
             A+ IT+          AG +
Sbjct: 192 AWAIMITSILLLLTLPVLAGGL 213



 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 15/22 (68%), Positives = 22/22 (100%)
 Frame = +1

Query: 511 TVGIDIDTRAYFTSATIIIAVP 576
           TVG+D+DTRAYF++AT++IA+P
Sbjct: 300 TVGLDVDTRAYFSAATMVIAIP 321


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 486 ILIPQC*YSINYPKQPKVSFFLFLVK 409
           +L+P+  Y  NYP    +  FL+++K
Sbjct: 231 LLVPEELYRSNYPCPQNIDQFLYMIK 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,954,191
Number of Sequences: 5004
Number of extensions: 34313
Number of successful extensions: 62
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)