Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0545
         (576 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02590.1 68416.m00250 delta 7-sterol-C5-desaturase, putative ...    29   2.9  
At5g37400.1 68418.m04499 hypothetical protein contains Pfam PF04...    28   3.9  
At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1) ide...    28   3.9  

>At3g02590.1 68416.m00250 delta 7-sterol-C5-desaturase, putative
           similar to delta7 sterol C-5 desaturase GI:5031219 from
           [Arabidopsis thaliana]
          Length = 279

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 266 NRSKLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFTRIWYNFSYY 409
           NR  L +++  + W   P+F+ T++  +     LYF    +W  + YY
Sbjct: 20  NRMVLSHLLPVNLWEPLPHFLQTWLRNYLAGNILYFISGFLWCFYIYY 67


>At5g37400.1 68418.m04499 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
          Length = 623

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/62 (25%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
 Frame = -1

Query: 426 FLFLVK*YEKLYQILVK-LKYKLQDVQKIKINVDIKLGLLLQQDQKMMYLSFDLLIILYS 250
           + FL    +++Y+IL++ ++Y+++ V  + +   +K+G+LL   +    L+ D+L I++ 
Sbjct: 180 YRFLQNFLDEVYKILLRPVEYEVE-VWILALKSAVKMGILLMDSEMRFDLTRDILHIVWK 238

Query: 249 SS 244
            S
Sbjct: 239 CS 240


>At3g02580.1 68416.m00249 delta 7-sterol-C5-desaturase (STE1)
           identical to sterol-C5-desaturase GB:AAD12944 GI:4234768
           from [Arabidopsis thaliana]
          Length = 281

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 266 NRSKLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFTRIWYNFSYY 409
           NR  L +++  + W   P+F+ T++  +     LYF    +W  + YY
Sbjct: 19  NRIVLSHLLPANLWEPLPHFLQTWLRNYLAGTLLYFISGFLWCFYIYY 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,846,246
Number of Sequences: 28952
Number of extensions: 168870
Number of successful extensions: 268
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)