Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0543
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces p...    27   2.4  

>SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 208

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = +2

Query: 422 SVTISRAQSN*YKKMYTLTFCLYVAELTTQRLSVTLTYRIK*GLICRSTLNYYIRHSAS 598
           S  IS++QS   K++  LT    +A  ++ + SV+L   I   L+C +  N Y R  A+
Sbjct: 119 STVISKSQSPSVKQL-KLTESTLLAPSSSLKPSVSLKKDISSNLLCAAASNGYFRRPAA 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,381
Number of Sequences: 5004
Number of extensions: 46929
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)