Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0543
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6)            29   4.4  
SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)                      28   7.6  
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6)
          Length = 1953

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +2

Query: 503 TTQRLSVTLTYRIK*GLICRSTLNYY 580
           TT+RLSVTLT ++   +IC ST+ +Y
Sbjct: 911 TTRRLSVTLTTKVF-LMICASTITHY 935


>SB_59326| Best HMM Match : FtsX (HMM E-Value=2.2)
          Length = 238

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/51 (25%), Positives = 29/51 (56%)
 Frame = +2

Query: 173 WTQLKVLLRFNLTFIVSIRLLSTFEYILFQLLVVIRGNFKIILTTVVIIKL 325
           +T + ++     T I+ I +++    I+  ++++I     II+TT+VII +
Sbjct: 156 FTIIIIITTTTTTIIIIIIIINIIIIIITIIIIIIATTIVIIVTTIVIISI 206


>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3259

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = +2

Query: 197 RFNLTFIVSIRLLSTFEY---ILFQLLVVIRGNFKI--ILTTVVIIKL 325
           R  L   VS+R++  F Y   +  QLL++I GN+    +LT  + I L
Sbjct: 27  RHVLALRVSVRVIRIFAYFGQVFLQLLILITGNYNFFNLLTMTLCISL 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,935,649
Number of Sequences: 59808
Number of extensions: 313290
Number of successful extensions: 637
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)