Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0543
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49911-9|CAA90133.1|  682|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z92785-1|CAB07199.2|  299|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z49911-9|CAA90133.1|  682|Caenorhabditis elegans Hypothetical
           protein M28.7 protein.
          Length = 682

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +1

Query: 427 YYFKGAKQLIQKNVHFNLLSIRRGTDNPTIIGYINISH*VRTHLPIYSKLL 579
           +YF+  +   +  + F+   +R    +PT++  +  SH V+T + I  K L
Sbjct: 417 WYFEKKESQTRSCIEFSDFVLRSNYRSPTVVLVVEASHLVKTQIGIEEKSL 467


>Z92785-1|CAB07199.2|  299|Caenorhabditis elegans Hypothetical
           protein F31E9.2 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +2

Query: 182 LKVLLRFNLTFIVSIRLLSTFEYILFQLLVV--IRGNFKIILTTVVI 316
           L  L+ + LTF+V +R   TF+   FQL V   I   F  I+  VVI
Sbjct: 16  LPSLILYILTFVVILRHRKTFDSSFFQLYVFDGIMNLFTYIMGFVVI 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,005,725
Number of Sequences: 27780
Number of extensions: 247066
Number of successful extensions: 538
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)