Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0543
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.6  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   3.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.0  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   7.9  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 192 FYDLISRLLFPFDYYLHSNISYFS 263
           + D +SR  FPF  +L  N+ Y+S
Sbjct: 358 YIDKVSRFFFPFS-FLILNVVYWS 380


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +1

Query: 277 SWKFQNYSDYRRYHK 321
           ++K+ NY++Y  Y+K
Sbjct: 88  NYKYSNYNNYNNYNK 102


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +3

Query: 198 DLISRLLFPFDYYLHSNISYFSY 266
           D+I+R+ FP  Y++     +  Y
Sbjct: 463 DVIARITFPVAYFMFLTFFFIHY 485


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +3

Query: 198 DLISRLLFPFDYYLHSNISYFSY 266
           D+I+R+ FP  Y++     +  Y
Sbjct: 449 DVIARITFPVAYFMFLTFFFIHY 471


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +3

Query: 198 DLISRLLFPFDYYLHSNISYFSY 266
           D+I+R+ FP  Y++     +  Y
Sbjct: 483 DVIARITFPVAYFMFLTFFFIHY 505


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +3

Query: 198 DLISRLLFPFDYYLHSNISYFSY 266
           D+I+R+ FP  Y++     +  Y
Sbjct: 432 DVIARITFPVAYFMFLTFFFIHY 454


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 125 DLVNFVNPISFPSIFAWTQLKVL 193
           D  NF+   +FPS+++ T+ + L
Sbjct: 184 DASNFIAMETFPSVYSKTRRRAL 206


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,360
Number of Sequences: 438
Number of extensions: 3533
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)