Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0542
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces pom...    31   0.15 
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    27   1.9  

>SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 317 QIISLLSPFKTDLYIWSSRMW 379
           QIIS+  P +  L++WSSR W
Sbjct: 95  QIISISKPLEDKLWLWSSRFW 115


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 383 GYLCM*LLGSVYLLTICIEFYKIC 454
           GYL    L    ++ +CI++Y+IC
Sbjct: 170 GYLRFGFLSLFIIMAVCIQYYRIC 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,684
Number of Sequences: 5004
Number of extensions: 44186
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)