Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0542
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z92833-5|CAK12560.1|  411|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z92833-4|CAK12559.1|  442|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z92833-3|CAB07378.1|  506|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U51163-1|AAA96319.1|  506|Caenorhabditis elegans fork head/HNF-3...    28   5.2  
AC026301-3|AAK68898.2|  332|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
           protein H43E16.1 protein.
          Length = 1203

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = -3

Query: 498 TGPKQSHLGE*LETIHIL*NSIQIVNK*TEPNNYMHK*PLHILEDQIYKSVLKGLNN 328
           T P Q+     L +I    NS++  N  ++PN+  +K  +  + D +  S++ GLNN
Sbjct: 46  TCPTQTQCNTNLFSISTQVNSLKWNNDYSDPNSDAYKYAVKNITDSLTSSLVSGLNN 102


>Z92833-5|CAK12560.1|  411|Caenorhabditis elegans Hypothetical
           protein F38A6.1c protein.
          Length = 411

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 487 FWTCHGHLSENINSPCFLKKKKK 555
           FWT H H      + C+L+++K+
Sbjct: 214 FWTLHEHCGNMFENGCYLRRQKR 236


>Z92833-4|CAK12559.1|  442|Caenorhabditis elegans Hypothetical
           protein F38A6.1b protein.
          Length = 442

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 487 FWTCHGHLSENINSPCFLKKKKK 555
           FWT H H      + C+L+++K+
Sbjct: 245 FWTLHEHCGNMFENGCYLRRQKR 267


>Z92833-3|CAB07378.1|  506|Caenorhabditis elegans Hypothetical
           protein F38A6.1a protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 487 FWTCHGHLSENINSPCFLKKKKK 555
           FWT H H      + C+L+++K+
Sbjct: 309 FWTLHEHCGNMFENGCYLRRQKR 331


>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 270 TESSNSLPDRFLSCSVYVRNTGRSVNPGRYT 178
           T+S+ + P    +   YVR TG SV+P R T
Sbjct: 230 TKSTRTTPSTTTAKQCYVRRTGSSVSPPRET 260


>U51163-1|AAA96319.1|  506|Caenorhabditis elegans fork
           head/HNF-3-like protein protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 487 FWTCHGHLSENINSPCFLKKKKK 555
           FWT H H      + C+L+++K+
Sbjct: 309 FWTLHEHCGNMFENGCYLRRQKR 331


>AC026301-3|AAK68898.2|  332|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.7 protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 174 LMYTCLDSRFVLYFSHKQ 227
           + Y+ LDS+F+L+FSH Q
Sbjct: 221 IWYSRLDSKFILHFSHFQ 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,772,557
Number of Sequences: 27780
Number of extensions: 230999
Number of successful extensions: 379
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)