Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0542
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   0.91 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   0.91 
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   4.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   4.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   6.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.4  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 296 KNPVMVDQIISLLSPFKTDLYIWSSRMWSGY 388
           K   M  Q+   +SP  ++   ++SR+W GY
Sbjct: 610 KKEGMPFQLFLYVSPVSSEYNQYNSRIWGGY 640



 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 125 LIYVQLLRLIIAFFKKFQH 69
           L Y QLLR + A FK F H
Sbjct: 99  LYYPQLLREMSALFKLFYH 117


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 296 KNPVMVDQIISLLSPFKTDLYIWSSRMWSGY 388
           K   M  Q+   +SP  ++   ++SR+W GY
Sbjct: 610 KKEGMPFQLFLYVSPVSSEYNQYNSRIWGGY 640



 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 125 LIYVQLLRLIIAFFKKFQH 69
           L Y QLLR + A FK F H
Sbjct: 99  LYYPQLLREMSALFKLFYH 117


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 303 GFLLNLDRYYPTESSN 256
           G L N+ RY+PT++ N
Sbjct: 75  GNLANVIRYFPTQALN 90


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 303 GFLLNLDRYYPTESSN 256
           G L N+ RY+PT++ N
Sbjct: 75  GNLANVIRYFPTQALN 90


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 219 VRNTGRSVNPGRY 181
           +  TGRSVNP  Y
Sbjct: 382 IEGTGRSVNPRYY 394


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 401 LLGSVYLLTICIEFYKICI 457
           LLG   L T+ ++ + IC+
Sbjct: 302 LLGKFVLFTMILDTFSICV 320


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +2

Query: 362 WSSRMWSGYL 391
           W++R W GY+
Sbjct: 303 WAARPWQGYM 312


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +2

Query: 362 WSSRMWSGYL 391
           W++R W GY+
Sbjct: 303 WAARPWQGYM 312


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +2

Query: 362 WSSRMWSGYL 391
           W++R W GY+
Sbjct: 303 WAARPWQGYM 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,670
Number of Sequences: 438
Number of extensions: 3069
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)